Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 4.1e-234 814.3 402 100.0
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.3e-222 776.2 402 93.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 92.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 92.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.5
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.5
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 91.8
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 92.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 92.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 91.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 92.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 92.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.3
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 90.8
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.8
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 91.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 90.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.0
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 90.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.5
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.5
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 90.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 90.5
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.0
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 91.0
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.0
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.5
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.0
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.0
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 8.7e-216 753.4 416 88.2
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 90.3
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 90.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.0
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.5e-215 751.9 401 89.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 4.3e-215 751.1 416 88.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 89.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 89.6
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 438 84.5
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.1
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.6
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.1
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.8
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 88.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 88.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 88.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 89.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.6
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 88.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.1
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 9.9e-212 740.0 411 87.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.8
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.1
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 87.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.3
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.9e-211 737.6 402 87.6
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.8
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 86.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 9.3e-210 733.4 417 85.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 86.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 7.9e-209 730.3 429 83.4
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 87.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.6
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 5.1e-208 727.6 441 82.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 86.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.1e-207 726.5 396 87.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.8
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 88.1
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.2e-206 720.7 401 86.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.6e-204 715.3 400 85.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.2e-203 712.2 402 87.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.2e-203 712.2 419 85.0
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 3.8e-203 711.4 402 85.3
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 81.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.3e-198 696.4 402 83.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.4e-197 692.2 402 84.3
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 4.5e-196 688.0 402 82.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.9e-195 685.3 375 86.9
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.8e-195 684.9 402 81.6
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 6.5e-195 684.1 402 83.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.9e-194 682.6 361 92.0
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 9.3e-194 680.2 357 91.6
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 2.7e-193 678.7 402 80.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-193 677.2 402 81.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 2.0e-188 662.5 360 88.1
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.1e-181 638.6 340 91.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 5.3e-181 637.9 402 78.4
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.0e-176 623.6 402 73.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.3e-176 622.5 401 73.3
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.5e-175 619.8 402 77.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 7.4e-175 617.5 334 88.9
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.1e-173 611.7 402 72.4
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 7.0e-173 610.9 402 71.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.2e-171 605.9 403 71.2
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.6e-169 599.7 403 70.0
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 8.2e-166 587.4 401 69.1
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.1e-165 585.1 402 69.4
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 9.8e-159 563.9 403 66.3
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.5e-154 549.3 289 91.0
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 6.6e-147 524.6 403 68.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 9.2e-141 504.2 419 64.0
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 3.0e-139 499.2 402 65.2
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.3e-126 457.2 259 84.2
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.4e-120 437.2 394 53.6
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.7e-116 422.9 395 53.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.2e-113 414.1 276 75.7
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 8.1e-105 384.8 229 81.7
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.4e-103 379.4 219 84.0
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-102 377.5 219 83.1
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.9e-102 376.3 219 82.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-82 310.8 300 52.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.1e-80 303.1 160 90.6
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.0e-79 300.4 163 89.6
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.2e-52 211.5 116 86.2
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 7.0e-32 142.5 86 79.1
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 9.2e-32 142.1 351 27.6
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 9.2e-32 142.1 351 29.1
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.4e-18 96.7 47 95.7
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 5.0e-14 83.2 45 80.0
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-11 73.9 318 22.6
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 5.2e-11 73.2 72 55.6
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 2.7e-07 60.8 353 20.4


User provided reference genes

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