Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 2.7e-171 605.1 286 100.0
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 3.5e-150 535.0 289 88.6
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.2e-147 526.6 285 87.0
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 6.1e-147 524.2 286 84.3
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 8.0e-147 523.9 278 86.3
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 1.1e-145 520.0 276 86.6
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.7e-144 515.0 285 83.9
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 1.1e-143 513.5 286 82.9
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 7.0e-143 510.8 277 84.5
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.2e-142 510.0 283 82.3
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 1.7e-141 506.1 286 82.9
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 1.7e-141 506.1 285 80.7
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 2.9e-141 505.4 276 84.4
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 3.8e-141 505.0 275 85.1
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 6.5e-141 504.2 277 84.8
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.1e-140 503.4 284 83.1
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.9e-140 502.7 274 83.9
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.9e-140 502.7 285 81.1
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.9e-140 502.7 288 83.3
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 3.2e-140 501.9 281 80.4
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 4.2e-140 501.5 292 81.5
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 5.5e-140 501.1 292 81.5
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 5.5e-140 501.1 286 80.4
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 7.2e-140 500.7 291 81.8
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 7.2e-140 500.7 285 82.5
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 3.6e-139 498.4 286 81.8
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 4.7e-139 498.0 282 81.9
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 4.7e-139 498.0 277 82.7
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 8.0e-139 497.3 270 84.1
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 8.0e-139 497.3 278 82.0
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 8.0e-139 497.3 278 82.4
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 1.8e-138 496.1 285 81.8
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.8e-138 496.1 289 79.6
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.2e-137 493.4 285 81.1
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.2e-137 493.4 285 81.1
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 1.2e-137 493.4 272 83.1
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.5e-137 493.0 285 81.4
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 1.5e-137 493.0 278 82.4
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.5e-137 493.0 272 83.1
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.5e-137 493.0 275 82.9
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 2.0e-137 492.7 274 81.8
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 2.0e-137 492.7 282 79.8
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 3.4e-137 491.9 286 78.3
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 4.4e-137 491.5 272 82.7
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 7.5e-137 490.7 286 80.1
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 7.5e-137 490.7 280 79.6
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 7.5e-137 490.7 282 79.8
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 1.3e-136 490.0 274 81.4
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.3e-136 490.0 277 82.3
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 1.7e-136 489.6 275 81.1
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.7e-136 489.6 281 79.4
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.7e-136 489.6 271 81.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 2.2e-136 489.2 274 82.5
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 2.2e-136 489.2 272 82.7
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 2.2e-136 489.2 271 81.2
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 4.8e-136 488.0 311 74.9
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 6.3e-136 487.6 274 80.7
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 6.3e-136 487.6 272 82.0
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.1e-135 486.9 281 79.0
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 1.4e-135 486.5 274 82.1
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 2.4e-135 485.7 277 80.9
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.1e-135 485.3 277 81.2
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 3.1e-135 485.3 287 82.2
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 5.4e-135 484.6 277 80.9
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 5.4e-135 484.6 275 80.0
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 7.0e-135 484.2 276 81.9
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 1.6e-134 483.0 280 80.0
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.6e-134 483.0 275 81.8
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 3.5e-134 481.9 282 80.1
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 4.5e-134 481.5 255 86.7
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 5.9e-134 481.1 281 80.1
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.3e-133 479.9 287 78.4
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.3e-133 479.9 275 80.7
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 2.9e-133 478.8 314 74.2
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 5.0e-133 478.0 273 79.1
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 6.5e-133 477.6 290 76.6
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 6.5e-133 477.6 265 84.2
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.2e-131 473.4 284 76.8
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.6e-131 473.0 298 76.8
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.6e-131 471.9 274 78.8
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.8e-130 469.5 285 78.9
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 4.0e-130 468.4 271 80.8
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 6.8e-130 467.6 282 78.4
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.5e-129 466.5 276 79.3
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 7.5e-129 464.2 317 70.7
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 2.8e-128 462.2 273 77.3
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 2.8e-128 462.2 273 77.3
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 3.7e-128 461.8 280 78.6
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 1.4e-127 459.9 276 78.3
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 2.4e-127 459.1 273 76.6
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 1.6e-126 456.4 271 76.8
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.7e-126 455.7 325 68.3
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 4.5e-126 454.9 271 76.4
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 5.0e-125 451.4 277 78.3
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 5.0e-125 451.4 288 75.7
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 9.5e-124 447.2 279 73.5
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 8.0e-123 444.1 304 70.7
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 4.0e-122 441.8 281 74.4
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.4e-121 438.7 312 67.6
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 9.8e-121 437.2 270 73.7
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.2e-120 436.0 371 61.5
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.1e-119 433.7 275 73.8
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 5.9e-118 427.9 271 75.3
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 3.9e-117 425.2 275 72.0
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.5e-116 422.5 278 70.9
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 6.8e-114 414.5 238 81.9
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.1e-108 397.1 293 67.6
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.8e-106 389.8 238 75.6
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.8e-106 389.8 222 81.1
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 2.6e-105 386.0 215 83.3
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 4.1e-103 378.6 276 66.7
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.1e-102 376.3 210 81.4
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.7e-101 373.2 200 86.5
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.9e-100 369.8 276 60.1
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.3e-98 362.8 195 85.6
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 8.4e-96 354.4 278 60.4
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 3.5e-94 349.0 275 60.0
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 1.7e-88 330.1 189 81.5
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 1.7e-88 330.1 189 81.5
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.2e-88 329.7 218 72.5
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 8.4e-80 301.2 308 55.5
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.4e-79 299.7 226 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 5.4e-79 298.5 226 62.8
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.6e-78 297.0 275 53.8
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.0e-69 267.7 156 80.8
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.9e-64 249.6 183 61.7
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.5e-63 246.5 161 75.8
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 2.8e-59 233.0 210 51.4
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 2.6e-57 226.5 131 78.6
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 5.5e-55 218.8 262 44.3
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 3.1e-50 203.0 237 48.9
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.9e-39 167.2 96 77.1
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 7.2e-39 165.2 274 36.9
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 1.0e-37 161.4 211 40.3
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 2.0e-36 157.1 113 69.0
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 3.3e-28 129.8 82 69.5
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 3.2e-15 86.7 71 56.3
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 3.2e-15 86.7 39 92.3
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 6.8e-13 79.0 45 77.8


User provided reference genes

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