Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 3.5e-186 654.8 330 100.0
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-119 433.7 323 70.0
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 9.0e-110 401.0 287 70.7
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.5e-98 362.5 273 65.9
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 7.1e-91 338.2 241 68.5
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 5.3e-78 295.4 238 62.2
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.2e-76 290.0 223 65.5
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.2e-75 285.8 250 54.0
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 9.4e-75 284.6 248 58.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.6e-74 282.7 246 56.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.6e-74 282.7 252 54.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.1e-74 282.0 256 55.1
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.8e-73 280.4 243 56.8
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 3.9e-73 279.3 233 59.2
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 3.3e-72 276.2 232 58.2
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.7e-72 275.4 235 57.4
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 4.8e-71 272.3 237 56.1
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 4.8e-71 272.3 252 54.4
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.4e-70 270.8 236 56.4
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 4.1e-70 269.2 246 52.4
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 7.0e-70 268.5 230 57.0
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 9.1e-70 268.1 236 59.3
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 3.5e-69 266.2 259 53.7
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.5e-69 266.2 259 54.1
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 5.9e-69 265.4 236 57.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.7e-68 263.8 237 54.4
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 2.9e-68 263.1 237 56.5
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.1e-67 261.2 241 52.7
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.5e-67 260.8 240 54.2
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.5e-67 260.0 246 52.8
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 2.5e-67 260.0 233 57.9
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 2.1e-66 256.9 237 54.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.7e-66 256.5 257 49.8
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.0e-65 254.6 242 52.5
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.0e-65 254.6 232 52.6
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 2.3e-65 253.4 258 48.8
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 5.2e-65 252.3 257 51.8
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.7e-65 251.9 255 49.8
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 6.7e-65 251.9 260 49.2
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.7e-65 251.9 257 50.6
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 8.8e-65 251.5 235 51.9
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.1e-64 251.1 235 51.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 2.0e-64 250.4 250 51.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.0e-64 250.4 250 49.2
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.4e-64 249.2 257 54.5
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.7e-64 248.8 237 52.7
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.8e-63 246.5 237 52.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 2.8e-63 246.5 253 47.8
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 3.7e-63 246.1 250 49.6
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.8e-62 243.8 253 50.2
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.8e-62 243.8 259 49.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 3.1e-62 243.0 236 52.5
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.1e-62 242.7 264 49.6
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 9.1e-62 241.5 240 51.7
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.0e-61 240.4 228 53.9
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.0e-61 240.4 233 50.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 4.5e-61 239.2 237 51.5
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 4.5e-61 239.2 237 50.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 4.5e-61 239.2 229 55.0
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.9e-61 238.8 243 51.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 7.7e-61 238.4 228 54.4
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 7.7e-61 238.4 236 51.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 7.7e-61 238.4 237 51.1
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.0e-60 238.0 243 51.0
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.0e-60 238.0 252 49.2
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.3e-60 237.7 231 51.5
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.3e-60 237.7 252 49.2
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.3e-60 237.7 252 48.0
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.7e-60 237.3 252 48.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.9e-60 236.5 252 48.8
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 5.0e-60 235.7 248 49.6
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.1e-59 234.6 228 52.6
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-59 234.6 235 51.1
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 9.4e-59 231.5 236 51.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.2e-58 231.1 208 55.8
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.6e-58 230.7 233 51.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 8.0e-58 228.4 239 48.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.4e-57 227.6 239 49.4
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.4e-57 227.6 236 50.8
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.8e-57 227.3 255 47.1
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.8e-57 227.3 215 53.5
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.3e-57 226.9 246 47.6
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 5.2e-57 225.7 238 49.2
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.2e-57 225.7 261 46.0
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.8e-57 224.9 218 53.7
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.2e-56 224.6 238 47.5
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.5e-56 224.2 237 46.4
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.5e-56 224.2 246 46.7
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.0e-56 223.8 239 49.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.6e-56 223.4 250 46.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.4e-56 223.0 251 47.4
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 4.4e-56 222.6 261 45.2
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 5.7e-56 222.2 245 47.3
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.5e-56 221.9 237 48.5
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.5e-56 221.9 238 48.3
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.3e-55 221.1 239 46.4
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.3e-55 221.1 238 47.5
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.2e-55 220.3 230 47.4
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 6.3e-55 218.8 209 55.0
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 6.3e-55 218.8 232 48.7
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 6.3e-55 218.8 210 53.8
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.1e-54 218.0 236 48.3
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.1e-54 218.0 236 48.3
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.1e-54 218.0 245 48.2
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 2.4e-54 216.9 243 47.3
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.1e-54 216.5 237 48.1
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 4.1e-54 216.1 222 50.5
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 5.4e-54 215.7 236 47.9
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 5.4e-54 215.7 205 52.7
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 9.1e-54 214.9 231 48.1
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.6e-53 214.2 188 58.0
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.6e-53 214.2 247 46.6
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.5e-53 213.0 239 46.0
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.3e-52 211.1 163 66.9
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.7e-52 210.7 241 46.1
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.1e-51 208.0 238 43.7
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.9e-51 207.2 243 46.5
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 3.2e-51 206.5 240 44.2
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.1e-50 203.8 207 51.2
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.1e-50 203.8 207 51.2
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.1e-50 203.8 238 43.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.0e-49 199.9 188 53.7
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.0e-49 199.9 188 53.7
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 8.8e-49 198.4 214 45.8
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 4.9e-47 192.6 239 43.5
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 7.0e-46 188.7 238 43.3
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-45 188.0 231 43.7
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.9e-44 183.3 164 57.9
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.9e-44 183.3 236 44.5
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 4.2e-43 179.5 182 52.7
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 5.5e-43 179.1 208 45.2
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.7e-42 176.0 204 44.1
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 8.0e-42 175.3 196 45.4
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 9.8e-40 168.3 223 43.0
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.6e-37 161.0 242 37.6
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 5.9e-37 159.1 216 40.3
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 2.2e-31 140.6 98 62.2
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.2e-30 136.7 169 44.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.3e-27 125.6 108 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 4.7e-26 122.9 187 39.0
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-24 118.2 136 50.7
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 3.7e-23 113.2 95 57.9
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 7.1e-22 109.0 93 54.8
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 6.0e-21 105.9 98 48.0
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.3e-20 104.8 139 42.4
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 3.0e-20 103.6 253 30.4
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.1e-19 101.7 71 63.4
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.1e-17 95.1 133 43.6
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.8e-17 94.4 86 57.0
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 2.6e-16 90.5 135 37.0
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.3e-11 72.4 55 65.5


User provided reference genes

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