Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 9.2e-167 591.7 302 100.0
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.3e-99 368.6 306 64.4
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.3e-99 368.6 306 64.4
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 3.8e-96 357.1 284 63.0
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 1.9e-95 354.8 303 63.0
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 4.3e-71 273.9 309 53.4
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 4.9e-67 260.4 293 51.5
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 3.5e-57 227.6 256 49.6
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 5.1e-56 223.8 226 54.0
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 1.1e-55 222.6 300 44.0
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 7.3e-55 219.9 238 50.8
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 8.1e-54 216.5 309 43.4
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 2.3e-53 214.9 301 43.9
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 5.2e-53 213.8 282 45.7
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 6.8e-53 213.4 305 41.0
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 6.8e-53 213.4 304 43.4
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 8.9e-53 213.0 300 44.3
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 1.5e-52 212.2 325 42.5
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 9.9e-52 209.5 309 42.7
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 1.3e-51 209.1 300 42.7
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 1.7e-51 208.8 307 43.3
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 3.7e-51 207.6 303 40.9
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 4.9e-51 207.2 296 40.5
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 4.9e-51 207.2 230 48.3
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 6.4e-51 206.8 240 46.7
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.4e-50 205.7 305 40.3
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 3.2e-50 204.5 232 49.6
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 3.2e-50 204.5 232 48.7
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 5.4e-50 203.8 235 49.4
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 7.1e-50 203.4 234 47.9
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 6.0e-49 200.3 231 44.2
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 7.8e-49 199.9 225 47.1
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 1.7e-48 198.7 233 48.1
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 3.0e-48 198.0 236 44.1
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 3.9e-48 197.6 300 41.0
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 3.9e-48 197.6 231 48.1
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 6.6e-48 196.8 283 43.8
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 6.6e-48 196.8 293 43.0
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 1.1e-47 196.1 300 40.0
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 1.1e-47 196.1 303 40.3
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 1.5e-47 195.7 227 46.7
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 9.6e-47 193.0 300 41.3
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 1.2e-46 192.6 296 42.2
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 2.8e-46 191.4 261 41.4
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 1.1e-45 189.5 232 45.7
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 5.2e-45 187.2 230 43.5
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 6.8e-45 186.8 277 41.2
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 2.6e-44 184.9 239 43.9
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 3.4e-44 184.5 208 47.6
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 5.8e-44 183.7 304 39.1
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 5.8e-44 183.7 226 44.7
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 1.7e-43 182.2 226 42.0
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 8.4e-43 179.9 268 40.7
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.1e-42 179.5 304 38.5
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 4.2e-42 177.6 235 45.1
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 5.4e-42 177.2 230 42.6
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 2.1e-41 175.3 226 42.5
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 3.5e-41 174.5 244 43.0
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 3.5e-41 174.5 267 40.8
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 4.6e-41 174.1 277 39.4
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 7.8e-41 173.3 269 38.7
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 1.3e-40 172.6 258 43.8
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 2.3e-40 171.8 241 42.7
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 3.0e-40 171.4 304 37.5
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 3.9e-40 171.0 277 39.0
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 3.9e-40 171.0 226 45.1
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 4.3e-39 167.5 258 43.0
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 2.1e-38 165.2 225 42.2
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 3.6e-38 164.5 232 39.2
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 1.8e-37 162.2 235 39.6
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 3.1e-37 161.4 246 39.4
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 6.9e-37 160.2 201 41.3
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 1.5e-36 159.1 231 39.0
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 7.6e-36 156.8 236 39.8
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 2.4e-34 151.8 172 46.5
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 2.1e-33 148.7 287 36.2
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 6.0e-33 147.1 184 44.6
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 3.6e-30 137.9 227 35.2
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 8.1e-30 136.7 127 53.5
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 4.0e-29 134.4 103 61.2
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 4.0e-29 134.4 103 61.2
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 2.0e-28 132.1 183 42.1
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 3.4e-28 131.3 103 58.3
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 2.2e-27 128.6 249 35.7
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 2.2e-27 128.6 156 46.2
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 3.8e-27 127.9 207 38.6
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 3.8e-27 127.9 197 40.6
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 1.3e-24 119.4 99 57.6
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 3.0e-24 118.2 303 30.0
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 1.5e-23 115.9 200 36.5
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 4.3e-23 114.4 200 36.0
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 4.8e-22 110.9 135 44.4
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 2.6e-20 105.1 78 64.1
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 4.1e-13 81.3 143 38.5
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 1.2e-12 79.7 68 52.9
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.3e-11 76.3 100 38.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.9e-10 72.4 256 28.5
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 5.5e-10 70.9 220 26.4
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.6e-09 69.3 216 28.2
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 2.7e-09 68.6 221 26.7
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 4.6e-09 67.8 201 26.9
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.8e-08 65.9 184 25.5
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.8e-08 65.9 184 25.5
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 1.8e-08 65.9 164 26.8
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 3.9e-08 64.7 176 27.3
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 5.1e-08 64.3 87 41.4
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 5.1e-08 64.3 277 26.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.5e-07 62.8 191 26.7
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 3.3e-07 61.6 185 29.2
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 3.3e-07 61.6 231 22.5
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 3.3e-07 61.6 245 25.7
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.3e-07 61.6 194 25.8
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.3e-07 61.6 193 25.9
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 3.3e-07 61.6 194 27.8
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 4.3e-07 61.2 215 22.8
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 4.3e-07 61.2 203 27.1
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 5.7e-07 60.8 106 31.1
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 7.4e-07 60.5 278 24.8
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 9.7e-07 60.1 185 29.2
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 9.7e-07 60.1 204 25.5
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.3e-06 59.7 232 25.9
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.3e-06 59.7 206 25.2
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 1.6e-06 59.3 207 27.1
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 1.6e-06 59.3 171 24.0
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.6e-06 59.3 101 31.7
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 1.6e-06 59.3 103 33.0
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.6e-06 59.3 192 27.1
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 2.2e-06 58.9 190 26.8
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 2.2e-06 58.9 188 25.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.2e-06 58.9 195 28.2
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.8e-06 58.5 193 24.9
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 2.8e-06 58.5 191 25.1
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 2.8e-06 58.5 187 29.4
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 2.8e-06 58.5 259 27.8
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 3.7e-06 58.2 171 24.0
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 3.7e-06 58.2 187 27.3
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 3.7e-06 58.2 106 30.2
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 3.7e-06 58.2 97 33.0
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 4.8e-06 57.8 236 25.8
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 4.8e-06 57.8 224 25.0
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 6.3e-06 57.4 106 31.1
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 6.3e-06 57.4 168 27.4
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 6.3e-06 57.4 186 27.4
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 8.2e-06 57.0 196 27.6
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 8.2e-06 57.0 198 25.3
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 8.2e-06 57.0 230 28.7
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 8.2e-06 57.0 103 31.1
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 8.2e-06 57.0 259 25.1


User provided reference genes

Program Settings