Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 5.9e-175 617.5 321 100.0
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 9.9e-29 131.7 296 36.8
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 9.9e-29 131.7 298 40.9
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.7e-28 131.0 271 37.6
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 2.9e-28 130.2 222 41.9
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 6.4e-28 129.0 258 44.2
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 2.4e-27 127.1 297 35.0
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 3.2e-27 126.7 290 41.7
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 4.2e-27 126.3 296 41.2
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 2.7e-26 123.6 310 40.0
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.6e-26 122.9 304 35.5
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 6.0e-26 122.5 289 39.8
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.0e-25 121.7 300 40.7
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.6e-25 119.0 250 37.2
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 1.9e-24 117.5 271 36.2
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 4.3e-24 116.3 262 40.8
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 4.3e-24 116.3 244 36.1
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 5.6e-24 115.9 252 42.5
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 7.3e-24 115.5 300 35.3
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.6e-23 114.4 227 40.1
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.6e-23 114.4 253 37.2
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 8.1e-23 112.1 298 39.3
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.4e-22 111.3 304 32.2
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 1.4e-22 111.3 282 36.9
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 3.1e-22 110.2 277 31.8
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 4.0e-22 109.8 321 34.6
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 4.0e-22 109.8 247 38.1
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 5.3e-22 109.4 290 35.5
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 5.3e-22 109.4 270 32.2
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 6.9e-22 109.0 251 35.5
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 6.9e-22 109.0 264 35.2
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 1.5e-21 107.8 304 31.9
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.0e-21 107.5 307 33.9
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.0e-21 107.5 240 40.0
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 2.0e-21 107.5 240 39.6
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 2.0e-21 107.5 266 38.7
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 2.6e-21 107.1 308 32.5
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.6e-21 107.1 256 38.3
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 9.9e-21 105.1 305 32.1
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 9.9e-21 105.1 274 31.8
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.3e-20 104.8 270 32.6
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.3e-20 104.8 270 32.6
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.7e-20 104.4 296 36.5
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 3.8e-20 103.2 294 33.3
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.9e-20 102.8 295 35.9
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 4.9e-20 102.8 296 35.8
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.4e-20 102.4 314 31.2
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.4e-20 102.4 297 32.7
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 8.4e-20 102.1 282 37.9
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 8.4e-20 102.1 257 38.1
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.1e-19 101.7 286 31.8
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.9e-19 100.9 303 31.7
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.9e-19 100.9 303 31.7
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 5.4e-19 99.4 279 30.5
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 7.1e-19 99.0 271 35.8
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 9.3e-19 98.6 253 34.4
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.2e-18 98.2 274 36.1
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 4.6e-18 96.3 292 36.3
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 4.6e-18 96.3 234 34.6
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 4.6e-18 96.3 281 30.6
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 1.3e-17 94.7 268 31.3
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 1.3e-17 94.7 273 34.4
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 3.9e-17 93.2 294 35.0
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 3.9e-17 93.2 265 32.8
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 8.7e-17 92.0 251 29.9
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 8.7e-17 92.0 269 31.6
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 8.7e-17 92.0 253 31.6
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.5e-16 91.3 241 36.9
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 1.9e-16 90.9 272 32.4
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.3e-16 89.7 217 37.3
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 4.3e-16 89.7 261 28.7
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 5.6e-16 89.4 302 31.8
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 1.3e-15 88.2 257 31.1
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.3e-15 88.2 258 33.3
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.6e-15 87.8 259 30.9
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 4.8e-15 86.3 234 31.2
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.4e-14 84.7 282 30.1
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 5.3e-14 82.8 267 31.8
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 2.9e-12 77.0 348 32.5
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 6.4e-12 75.9 249 31.3
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 8.4e-12 75.5 285 29.1
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 8.4e-12 75.5 256 29.7
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-11 74.7 297 26.3
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.4e-11 74.7 268 29.1
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 2.4e-11 73.9 241 32.8
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 2.4e-11 73.9 217 33.2
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 1.2e-10 71.6 220 32.7
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 2.7e-10 70.5 140 37.9
Migut.B01906 Erythranthe guttata HOM05D007199 ORTHO05D007257 3.5e-10 70.1 143 42.7
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 4.6e-10 69.7 267 29.2
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.6e-10 69.7 186 34.4
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 6.0e-10 69.3 234 36.8
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 6.0e-10 69.3 271 29.5
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.0e-09 68.6 134 41.8
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.3e-09 68.2 279 28.0
MSTRG.28280 Avicennia marina HOM05D007199 ORTHO05D007257 2.3e-09 67.4 230 29.6
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 3.0e-09 67.0 272 28.3
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 3.9e-09 66.6 262 27.5
Lsat_1_v5_gn_7_2960 Lactuca sativa HOM05D002069 ORTHO05D001421 6.7e-09 65.9 223 32.3
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.5e-08 64.7 301 26.6
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 1.5e-08 64.7 304 28.3
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 2.5e-08 63.9 250 26.0
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 3.3e-08 63.5 242 28.5
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 9.6e-08 62.0 313 26.8
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 2.8e-07 60.5 134 40.3
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 8.1e-07 58.9 274 25.5
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 1.4e-06 58.2 251 25.9
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-06 58.2 286 29.4
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 2.4e-06 57.4 296 27.7
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 4.0e-06 56.6 324 32.1
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 5.3e-06 56.2 277 28.2
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 5.3e-06 56.2 314 25.5
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 9.0e-06 55.5 280 26.4
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 9.0e-06 55.5 276 25.7


User provided reference genes

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