Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 8.2e-129 463.8 241 100.0
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.5e-90 336.7 239 74.5
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.0e-90 336.3 235 74.5
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.0e-90 336.3 235 74.5
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 3.9e-86 322.0 235 73.6
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.4e-83 313.5 233 70.8
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 5.2e-83 311.6 234 68.8
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 8.9e-83 310.8 233 70.0
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.5e-82 310.1 232 69.8
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.5e-82 310.1 232 69.4
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.8e-82 308.1 233 69.5
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 4.1e-80 302.0 224 69.2
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 5.4e-80 301.6 222 69.8
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 7.1e-80 301.2 224 69.2
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 7.1e-80 301.2 235 70.6
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.6e-79 300.1 236 66.9
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 4.6e-79 298.5 233 70.4
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.9e-78 295.4 233 69.5
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.9e-77 293.1 233 67.4
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.5e-77 292.7 233 66.1
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 7.3e-77 291.2 235 66.4
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.2e-76 290.4 233 67.8
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.1e-75 287.3 233 67.0
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.1e-75 285.8 234 65.8
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.2e-74 283.9 234 65.8
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.6e-74 282.7 234 65.0
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 2.6e-74 282.7 233 65.2
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 4.4e-74 282.0 233 65.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 4.4e-74 282.0 234 64.5
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 4.4e-74 282.0 233 65.7
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 5.8e-74 281.6 236 66.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-73 280.4 234 65.0
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.7e-73 280.0 220 64.1
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 2.2e-73 279.6 234 63.7
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 2.2e-73 279.6 217 67.7
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.9e-73 279.3 253 61.3
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 2.9e-73 279.3 250 61.2
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.4e-73 277.7 234 64.5
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.1e-72 277.3 198 71.7
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.9e-72 276.6 233 64.4
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 2.4e-72 276.2 233 63.5
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 3.2e-72 275.8 235 63.8
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 3.2e-72 275.8 231 64.5
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 4.2e-72 275.4 253 60.5
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 4.2e-72 275.4 252 61.5
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 7.1e-72 274.6 196 70.4
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.3e-72 274.2 252 60.7
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-71 273.9 214 67.8
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 2.7e-71 272.7 220 66.4
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 4.6e-71 271.9 244 62.7
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 6.0e-71 271.6 222 64.9
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 6.0e-71 271.6 234 63.2
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.0e-70 270.8 233 61.4
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.0e-70 270.8 249 61.0
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.0e-70 270.8 256 59.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.0e-70 270.8 232 62.1
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.7e-70 270.0 199 71.4
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 2.5e-69 266.2 219 67.1
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 2.5e-69 266.2 235 63.0
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.5e-69 266.2 252 57.5
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 5.6e-69 265.0 234 60.7
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.6e-68 263.5 232 61.2
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 2.8e-68 262.7 232 62.1
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 3.6e-68 262.3 219 63.9
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 1.1e-67 260.8 231 63.2
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.8e-67 260.0 241 61.4
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.8e-67 260.0 247 59.9
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 2.4e-67 259.6 241 61.4
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 2.4e-67 259.6 231 60.6
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.4e-67 259.6 251 58.2
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.0e-66 256.5 238 61.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 2.0e-66 256.5 225 60.9
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.6e-66 256.1 232 60.8
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 5.8e-66 255.0 231 60.2
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 9.9e-66 254.2 221 63.8
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 1.7e-65 253.4 238 60.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 2.9e-65 252.7 221 62.4
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 3.8e-65 252.3 237 60.3
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.4e-64 249.6 247 57.9
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 5.4e-64 248.4 237 59.5
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.4e-64 248.4 230 59.1
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 7.1e-64 248.1 202 66.8
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.2e-63 247.3 257 58.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.6e-63 246.9 198 64.6
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.1e-63 246.5 263 54.4
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.0e-62 244.2 264 54.5
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.1e-61 240.7 202 62.9
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.3e-61 239.2 238 56.3
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 4.3e-61 238.8 284 51.4
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 4.8e-60 235.3 230 57.0
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.8e-59 233.4 218 59.6
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.9e-56 223.4 200 60.0
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.6e-55 220.3 229 56.3
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.3e-54 217.2 157 68.8
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.6e-52 210.3 197 57.9
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 5.1e-46 188.7 233 49.4
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.3e-44 184.1 234 47.0
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.3e-44 184.1 156 62.2
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 6.9e-43 178.3 193 52.8
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.1e-40 171.0 158 60.8
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 7.9e-39 164.9 154 53.9
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.5e-37 160.6 221 46.6
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.5e-37 159.8 155 54.2
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 5.7e-37 158.7 212 46.7
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 7.4e-37 158.3 231 44.2
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.8e-36 156.4 155 54.8
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 6.5e-33 145.2 157 48.4
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 3.6e-31 139.4 112 62.5
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.2e-28 130.2 93 67.7
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.1e-21 107.8 159 43.4
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 3.7e-20 102.8 156 42.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.1e-19 99.8 116 44.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 5.3e-19 99.0 115 51.3
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.1e-16 91.3 217 33.6
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.9e-16 90.5 111 45.0
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 5.5e-08 62.4 36 77.8
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.1e-07 58.9 66 54.5
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.1e-07 58.9 66 54.5
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.3e-06 57.0 66 53.0
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 2.3e-06 57.0 63 55.6


User provided reference genes

Program Settings