Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 4.1e-223 777.7 388 100.0
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 2.4e-186 655.6 388 82.7
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.2e-168 595.9 363 80.4
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 5.3e-162 574.7 380 76.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.2e-161 573.5 388 73.7
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.9e-159 566.2 386 72.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 3.2e-159 565.5 389 71.0
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 6.1e-158 561.2 389 69.7
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.8e-157 559.7 389 71.2
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 3.0e-157 558.9 389 71.7
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 3.0e-157 558.9 388 71.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 5.2e-157 558.1 389 70.7
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.6e-156 555.8 390 69.2
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.0e-153 546.2 392 68.9
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.7e-153 545.8 389 69.4
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 3.8e-152 542.0 389 68.6
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-151 540.4 392 68.6
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 3.2e-151 538.9 408 66.7
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.2e-151 537.7 390 67.7
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.1e-150 536.2 395 67.8
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 2.7e-150 535.8 382 70.2
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.7e-150 535.8 409 65.3
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 3.6e-150 535.4 386 67.6
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.0e-149 533.9 389 67.9
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.0e-149 533.9 409 66.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 2.3e-149 532.7 391 66.5
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.0e-149 532.3 395 67.8
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.0e-149 532.3 409 64.8
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 5.2e-149 531.6 389 66.8
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.0e-148 529.6 386 66.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 3.4e-148 528.9 376 70.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.7e-147 526.6 395 65.3
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.1e-146 523.9 382 69.1
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.4e-146 523.5 389 68.1
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 7.0e-146 521.2 387 67.2
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 9.1e-146 520.8 388 66.5
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.5e-145 518.5 388 65.2
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.5e-145 518.5 388 66.5
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 7.7e-145 517.7 388 64.9
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.3e-144 516.9 367 68.9
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.3e-144 516.9 391 67.5
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 6.6e-144 514.6 384 66.1
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 8.6e-144 514.2 389 66.3
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.5e-143 513.5 386 65.5
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.3e-143 512.3 384 65.6
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.6e-142 510.0 403 63.8
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.1e-142 509.6 391 66.2
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.1e-142 509.6 388 66.0
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.8e-142 509.2 387 65.4
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.8e-142 509.2 390 66.7
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.6e-142 508.8 391 66.2
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.6e-142 508.8 391 65.7
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 4.7e-142 508.4 385 66.2
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 4.7e-142 508.4 388 63.4
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.3e-141 506.1 383 66.8
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.8e-141 504.6 391 65.5
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 8.9e-141 504.2 361 68.7
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.2e-140 503.8 364 67.9
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.0e-140 503.1 382 64.7
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 2.0e-140 503.1 379 65.7
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 2.2e-139 499.6 382 65.2
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 2.2e-139 499.6 389 64.5
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-139 499.6 409 62.6
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.8e-139 499.2 396 63.9
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.8e-139 499.2 385 66.2
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 8.3e-139 497.7 386 64.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 2.4e-138 496.1 386 62.4
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 2.4e-138 496.1 352 69.9
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 3.1e-138 495.7 388 64.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 9.2e-138 494.2 374 66.3
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.2e-137 493.8 399 63.4
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 7.8e-137 491.1 390 62.3
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 5.0e-136 488.4 416 61.1
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 6.6e-136 488.0 390 64.1
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 2.1e-134 483.0 390 61.8
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 3.6e-134 482.3 387 61.5
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 3.6e-134 482.3 376 63.8
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 8.0e-134 481.1 390 62.1
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 8.0e-134 481.1 390 62.3
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.0e-133 480.7 389 61.7
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 5.2e-133 478.4 389 60.4
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 9.8e-132 474.2 389 59.6
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 9.8e-132 474.2 389 59.9
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 2.2e-131 473.0 390 60.3
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 2.2e-131 473.0 390 60.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.7e-131 472.2 388 59.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.6e-129 465.3 395 62.0
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 7.8e-129 464.5 364 63.7
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 3.3e-127 459.1 422 57.6
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 9.5e-127 457.6 333 67.0
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 4.0e-125 452.2 373 63.5
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 3.0e-120 436.0 388 59.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 3.9e-120 435.6 321 67.6
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 7.3e-119 431.4 409 55.7
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 9.2e-114 414.5 375 57.3
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.6e-113 413.7 335 62.7
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.6e-113 413.7 344 61.0
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 6.8e-109 398.3 350 56.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.4e-106 390.6 263 71.1
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 2.4e-106 389.8 251 75.7
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 4.8e-102 375.6 306 61.1
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 1.4e-93 347.4 221 78.3
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 3.8e-91 339.3 265 66.4
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 4.8e-86 322.4 259 61.4
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.1e-85 319.7 326 53.4
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.8e-80 303.9 202 70.8
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 4.8e-78 295.8 193 70.5
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 4.2e-74 282.7 271 51.3
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.0e-72 278.1 163 79.1
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 1.4e-66 257.7 195 69.7
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 9.1e-61 238.4 113 100.0
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.4e-58 231.1 188 60.1
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.4e-58 231.1 178 64.0
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.9e-57 225.3 130 77.7
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.0e-56 224.9 216 52.3
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 4.5e-52 209.5 212 50.5
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.2e-44 184.9 184 50.5
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.8e-43 179.9 124 72.6
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 6.8e-40 169.1 130 63.8
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 2.8e-38 163.7 200 48.0
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 9.1e-37 158.7 133 58.6
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.0e-35 155.2 133 57.9
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.6e-33 147.9 170 49.4
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 4.7e-33 146.4 243 37.9
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 3.1e-29 133.7 145 48.3
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 8.6e-27 125.6 84 71.4
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.0e-24 118.6 149 49.7
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 6.3e-22 109.4 116 53.4
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 1.8e-21 107.8 75 62.7
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.4e-21 107.5 63 79.4
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 5.4e-21 106.3 109 51.4
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 7.0e-21 105.9 72 70.8
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 3.9e-19 100.1 92 56.5
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 2.9e-14 84.0 45 86.7
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.6e-12 76.6 45 77.8
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 3.0e-11 73.9 64 59.4
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 3.4e-07 60.5 105 33.3
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 5.8e-07 59.7 34 76.5


User provided reference genes

Program Settings