Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.2e-155 553.1 289 100.0
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.7e-117 426.4 266 83.8
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.4e-114 416.8 266 81.6
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.8e-106 389.8 265 76.6
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 4.2e-103 378.6 265 73.6
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 6.0e-102 374.8 286 66.8
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 7.9e-102 374.4 268 73.1
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 8.7e-101 370.9 267 72.7
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.6e-100 368.2 265 70.9
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.6e-100 367.5 263 74.1
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 4.0e-98 362.1 265 70.2
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.5e-97 360.1 265 69.8
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.4e-97 359.0 263 71.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.2e-96 356.3 270 70.4
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 3.8e-96 355.5 268 69.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 3.8e-96 355.5 257 69.3
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.1e-95 354.0 269 68.8
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.9e-95 353.2 263 70.3
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 4.2e-95 352.1 269 68.0
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.2e-94 350.5 272 68.8
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.6e-94 350.1 268 68.7
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 7.9e-94 347.8 268 69.0
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.0e-93 347.4 275 67.6
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.3e-93 346.3 267 68.5
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.3e-93 346.3 267 67.8
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.3e-93 346.3 268 68.7
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.9e-93 345.5 267 68.2
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 3.9e-93 345.5 271 68.6
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 6.7e-93 344.7 267 67.4
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 6.7e-93 344.7 269 67.7
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.9e-92 343.2 280 64.6
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 2.5e-92 342.8 271 69.0
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 4.3e-92 342.0 268 69.0
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 5.7e-92 341.7 267 67.8
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 7.4e-92 341.3 267 69.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 7.4e-92 341.3 266 67.7
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.3e-91 340.5 267 66.3
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.2e-91 339.7 256 70.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 3.7e-91 339.0 268 67.2
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.1e-90 337.4 271 66.8
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.4e-90 336.3 271 66.1
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.1e-90 335.5 271 65.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.2e-89 334.0 268 66.0
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.2e-89 334.0 269 65.8
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 2.0e-89 333.2 271 64.2
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.6e-89 332.8 271 65.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.4e-89 332.4 271 64.2
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 5.9e-89 331.6 271 64.2
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.3e-88 330.5 269 63.9
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.7e-88 330.1 265 64.2
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-88 329.3 284 60.9
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 3.8e-88 328.9 268 64.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 3.8e-88 328.9 262 65.6
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 3.8e-88 328.9 271 66.8
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.5e-88 328.2 274 63.1
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 6.5e-88 328.2 272 65.1
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 6.5e-88 328.2 278 66.2
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 8.5e-88 327.8 271 64.2
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 8.5e-88 327.8 258 66.3
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 8.5e-88 327.8 269 65.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-88 327.8 274 63.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-87 327.0 273 62.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 4.2e-87 325.5 273 63.7
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 7.2e-87 324.7 271 63.5
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 2.1e-86 323.2 269 64.3
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 3.6e-86 322.4 269 64.3
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 3.6e-86 322.4 270 64.4
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.9e-86 321.2 274 62.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-85 320.9 274 62.0
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 3.0e-85 319.3 270 64.1
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 3.9e-85 318.9 270 64.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 5.1e-85 318.5 265 62.6
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.5e-84 316.2 271 63.5
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 7.4e-84 314.7 269 64.7
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 7.4e-84 314.7 270 62.2
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 9.7e-84 314.3 269 62.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.7e-83 312.4 301 56.8
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.2e-81 307.4 265 61.1
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.0e-81 306.6 266 64.7
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.6e-81 306.2 264 63.3
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.6e-81 306.2 269 61.0
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.7e-80 303.5 217 74.2
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.2e-80 303.1 336 51.8
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 5.0e-80 302.0 261 62.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-80 301.2 284 58.5
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 8.5e-80 301.2 265 60.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.6e-78 297.0 245 62.4
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 5.7e-76 288.5 265 58.1
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 9.7e-76 287.7 246 62.6
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.8e-69 266.9 275 51.6
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 7.0e-66 255.0 250 60.4
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 3.5e-65 252.7 285 50.2
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 7.7e-65 251.5 242 58.3
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 5.0e-64 248.8 190 67.9
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 5.0e-64 248.8 270 50.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 2.1e-62 243.4 254 54.7
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 4.0e-61 239.2 265 50.2
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 6.3e-59 231.9 146 77.4
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 5.0e-56 222.2 260 48.8
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 4.2e-55 219.2 179 64.2
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-52 211.1 192 57.3
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 8.3e-51 204.9 259 44.4
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.2e-49 201.1 196 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 1.7e-48 197.2 267 43.1
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 8.0e-46 188.3 230 45.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 5.4e-42 175.6 341 38.4
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.7e-41 173.3 137 69.3
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.1e-38 163.7 129 65.1
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.7e-35 152.9 113 71.7
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.9e-35 152.5 113 70.8
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 7.0e-34 148.7 106 71.7
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-28 131.3 112 62.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.0e-28 130.6 134 51.5
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 5.8e-28 129.0 246 32.5
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 2.2e-27 127.1 108 61.1
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 8.3e-27 125.2 108 65.7
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 8.3e-27 125.2 87 71.3
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-25 121.3 110 63.6
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.7e-24 117.5 84 67.9
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 8.6e-24 115.2 74 79.7
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.5e-23 114.4 274 31.4
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.5e-23 113.6 112 57.1
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 9.5e-23 111.7 127 49.6
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 9.5e-23 111.7 104 58.7
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.9e-21 105.1 56 83.9
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.2e-19 100.5 74 68.9
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.1e-18 98.2 116 50.0
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-18 97.1 56 85.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 2.3e-16 90.5 69 62.3
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.9e-16 89.7 80 60.0
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.1e-15 88.2 103 51.5
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 9.6e-15 85.1 68 60.3
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 2.1e-14 84.0 96 52.1
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.7e-08 64.3 89 43.8


User provided reference genes

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