Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 7.6e-89 330.5 169 100.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.1e-76 290.0 169 86.4
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.7e-75 286.2 169 84.6
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.1e-74 283.5 163 87.1
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.2e-72 275.8 169 79.3
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.9e-71 272.7 167 80.2
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.5e-71 272.3 169 79.3
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.4e-69 266.5 162 83.3
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 6.7e-69 264.2 169 78.1
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 8.8e-69 263.8 169 74.0
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.1e-68 263.5 164 79.9
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 1.5e-68 263.1 166 81.3
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.5e-68 263.1 166 80.1
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.6e-68 262.3 166 79.5
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.6e-68 262.3 164 78.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.7e-67 259.6 169 74.0
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.7e-67 259.6 165 81.2
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.7e-67 258.5 166 78.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.1e-66 256.9 166 79.5
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.4e-66 256.5 165 80.0
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.8e-66 256.1 165 80.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.8e-66 256.1 165 80.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 5.3e-66 254.6 165 80.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.2e-65 253.4 165 80.0
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.2e-65 253.4 168 76.2
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.2e-65 253.4 163 74.2
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.2e-65 253.4 169 71.0
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.5e-65 253.1 166 75.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.5e-65 253.1 169 71.6
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 3.5e-65 251.9 166 77.1
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 4.5e-65 251.5 166 75.3
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 5.9e-65 251.1 166 74.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 7.7e-65 250.8 166 74.7
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.3e-64 250.0 164 78.7
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.9e-64 248.8 166 74.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 3.8e-64 248.4 168 73.8
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 74.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.2e-63 245.4 153 81.0
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 5.5e-63 244.6 166 75.3
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.4e-63 243.8 168 72.6
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 72.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.6e-62 243.0 160 74.4
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 74.7
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.6e-62 243.0 168 72.0
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 75.9
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 74.1
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.6e-62 241.9 166 73.5
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.6e-62 241.9 192 67.2
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 72.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.8e-61 239.6 166 74.1
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-61 239.2 166 74.7
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 73.5
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 73.5
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 73.5
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 73.5
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.9e-61 238.4 166 73.5
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 5.2e-61 238.0 166 73.5
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 5.2e-61 238.0 166 73.5
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 5.2e-61 238.0 166 73.5
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 8.8e-61 237.3 163 74.8
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 8.8e-61 237.3 166 72.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-60 236.9 166 72.9
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 2.0e-60 236.1 166 71.1
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 7.4e-60 234.2 203 63.1
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 72.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 4.8e-59 231.5 166 69.9
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.1e-58 228.8 162 71.6
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 4.1e-58 228.4 159 73.6
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.2e-57 226.9 166 69.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-57 226.9 163 70.6
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-56 223.8 154 74.7
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.3e-56 223.4 166 69.3
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 3.8e-56 221.9 164 68.3
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 5.0e-56 221.5 188 62.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 6.5e-56 221.1 167 67.7
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.5e-55 219.9 162 70.4
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.5e-55 219.9 166 65.7
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.2e-55 218.4 190 62.1
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 5.5e-55 218.0 138 81.2
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.6e-54 216.5 149 74.5
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.2e-53 211.5 170 59.4
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 6.3e-51 204.5 165 63.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.1e-50 203.8 163 63.8
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 3.1e-50 202.2 163 63.2
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.1e-50 202.2 161 62.7
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 7.0e-50 201.1 174 64.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 9.1e-50 200.7 165 62.4
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 2.0e-49 199.5 139 72.7
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.5e-49 198.4 190 56.8
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 5.9e-49 198.0 163 62.0
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.7e-48 196.4 137 71.5
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 4.2e-47 191.8 139 69.8
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 5.5e-47 191.4 136 69.1
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.6e-46 189.9 137 68.6
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.1e-46 189.5 157 60.5
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 8.0e-46 187.6 162 55.6
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.8e-45 186.4 118 78.0
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.3e-45 186.0 153 58.2
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.3e-45 186.0 153 58.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 3.0e-45 185.7 153 57.5
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 3.0e-45 185.7 153 57.5
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.0e-45 185.7 122 77.0
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 5.2e-45 184.9 126 69.0
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.8e-45 184.1 169 53.3
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 8.8e-45 184.1 116 80.2
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.6e-44 182.6 169 52.7
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.7e-44 181.4 169 52.7
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.3e-43 180.3 165 53.9
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.7e-43 179.9 150 58.0
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.7e-43 179.9 117 76.9
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 2.2e-43 179.5 153 55.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.7e-43 178.7 169 51.5
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.1e-42 175.6 128 68.8
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 3.1e-42 175.6 127 70.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.0e-41 172.9 140 57.9
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.3e-40 169.5 116 74.1
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 3.8e-40 168.7 116 76.7
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 7.2e-39 164.5 116 72.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 3.0e-37 159.1 135 61.5
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.4e-34 150.2 163 49.7
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.6e-33 146.7 116 62.1
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.7e-33 146.0 156 50.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 4.5e-33 145.2 160 48.8
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 5.6e-31 138.3 128 55.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.6e-30 136.7 88 79.5
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 8.0e-30 134.4 163 44.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 5.2e-29 131.7 103 64.1
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.0e-28 129.8 122 54.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.3e-27 127.1 125 57.6
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 3.7e-27 125.6 139 47.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.1e-26 124.0 75 81.3
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 5.4e-26 121.7 119 57.1
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 6.0e-25 118.2 163 46.6
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 5.0e-24 115.2 71 77.5
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 6.6e-24 114.8 118 50.0
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 3.1e-21 105.9 95 53.7
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 8.9e-21 104.4 84 64.3
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-20 103.6 159 40.9
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 3.4e-20 102.4 75 62.7
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.4e-20 102.4 75 62.7
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.4e-20 102.4 75 62.7
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.7e-19 99.0 99 52.5
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 8.3e-19 97.8 163 41.1
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 7.0e-18 94.7 71 66.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.2e-14 84.0 52 75.0
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.2e-14 84.0 69 65.2
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.1e-13 80.9 75 60.0
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 3.1e-13 79.3 54 74.1
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 6.8e-13 78.2 49 79.6
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 6.8e-13 78.2 49 79.6
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 3.7e-11 72.4 54 66.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.2e-09 67.4 59 57.6
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.1e-09 66.6 48 68.8
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.0e-08 64.3 58 56.9
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 4.7e-06 55.5 43 67.4


User provided reference genes

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