Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 3.2e-90 335.1 177 100.0
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 5.4e-61 238.0 168 70.2
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 1.3e-59 233.4 165 70.3
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 1.2e-57 226.9 170 68.2
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 6.4e-54 214.5 164 64.6
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 4.1e-53 211.8 161 64.6
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.2e-52 210.3 165 64.2
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 3.5e-52 208.8 166 65.1
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 7.8e-52 207.6 165 63.6
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 1.5e-50 203.4 164 61.6
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 9.6e-50 200.7 154 61.7
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 9.6e-50 200.7 155 61.9
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 1.6e-49 199.9 167 59.9
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 2.1e-49 199.5 164 62.2
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 8.1e-49 197.6 156 60.9
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 6.8e-48 194.5 160 60.0
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 6.8e-48 194.5 165 58.8
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 2.6e-47 192.6 160 59.4
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 3.4e-47 192.2 160 59.4
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 3.4e-47 192.2 160 58.8
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 7.6e-47 191.0 160 58.1
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 9.9e-47 190.7 160 58.1
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 1.3e-46 190.3 156 59.0
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 2.2e-46 189.5 162 58.0
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 1.4e-45 186.8 163 57.1
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 2.4e-45 186.0 165 58.2
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 3.2e-45 185.7 166 57.8
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 4.2e-45 185.3 158 57.6
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 4.2e-45 185.3 159 57.9
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 1.2e-44 183.7 166 57.8
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 1.6e-44 183.3 160 56.2
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 4.6e-44 181.8 154 58.4
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 7.8e-44 181.0 160 59.4
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 2.3e-43 179.5 175 52.6
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 3.0e-43 179.1 159 54.7
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 3.0e-43 179.1 172 53.5
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 1.1e-42 177.2 153 56.9
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 1.5e-42 176.8 166 55.4
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 2.5e-42 176.0 165 52.1
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 4.3e-42 175.3 173 51.4
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 4.3e-42 175.3 170 52.9
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 5.6e-42 174.9 159 57.2
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 3.6e-41 172.2 157 55.4
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 3.6e-41 172.2 168 54.8
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 4.8e-41 171.8 156 55.8
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.1e-40 170.6 149 53.0
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 1.4e-40 170.2 159 54.7
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 1.8e-40 169.9 153 54.2
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 1.8e-40 169.9 153 58.2
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 2.4e-40 169.5 153 55.6
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 3.1e-40 169.1 149 55.0
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 9.0e-40 167.5 160 53.1
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 1.2e-39 167.2 166 52.4
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 2.6e-39 166.0 149 53.0
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 3.4e-39 165.6 162 51.2
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 4.4e-39 165.2 158 50.0
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 9.9e-39 164.1 153 50.3
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 9.9e-39 164.1 166 50.0
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 1.7e-38 163.3 148 51.4
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 2.2e-38 162.9 163 52.8
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 8.4e-38 161.0 160 46.9
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 8.4e-38 161.0 159 52.2
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.4e-37 160.2 160 50.0
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 1.9e-37 159.8 169 49.7
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 1.9e-37 159.8 166 51.2
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 1.9e-37 159.8 194 47.4
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 1.9e-37 159.8 168 50.0
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 1.9e-37 159.8 165 49.7
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 2.4e-37 159.5 156 50.6
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 3.2e-37 159.1 164 48.8
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 7.1e-37 157.9 161 50.9
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 7.1e-37 157.9 137 57.7
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 2.7e-36 156.0 152 49.3
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 4.6e-36 155.2 166 48.2
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 4.6e-36 155.2 121 65.3
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 1.7e-35 153.3 160 48.1
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 1.7e-35 153.3 166 48.2
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 2.3e-35 152.9 160 48.1
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 2.3e-35 152.9 158 49.4
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 6.6e-35 151.4 154 51.3
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.1e-34 150.6 149 51.0
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 1.5e-34 150.2 129 62.0
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.6e-33 146.7 169 48.5
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 3.6e-33 145.6 159 50.3
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 4.8e-33 145.2 160 46.2
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.8e-32 143.3 135 51.9
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 1.8e-32 143.3 169 47.3
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 2.9e-30 136.0 149 48.3
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 2.9e-30 136.0 149 48.3
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 3.8e-30 135.6 111 57.7
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 1.6e-28 130.2 158 50.0
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.0e-27 127.5 133 48.1
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 2.3e-27 126.3 114 54.4
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 3.0e-27 125.9 109 54.1
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 2.5e-26 122.9 111 51.4
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 1.6e-25 120.2 140 44.3
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 1.1e-24 117.5 164 45.1
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 2.4e-24 116.3 124 43.5
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 1.2e-23 114.0 97 58.8
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 2.6e-23 112.8 150 41.3
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 5.8e-23 111.7 88 64.8
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 3.2e-21 105.9 92 59.8
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 4.2e-21 105.5 93 58.1
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.2e-20 104.0 100 49.0
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 2.3e-19 99.8 174 36.8
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 3.9e-19 99.0 138 44.9
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 1.5e-18 97.1 142 38.7
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 1.9e-18 96.7 85 57.6
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 2.5e-18 96.3 106 44.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.3e-17 94.0 135 36.3
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 3.7e-17 92.4 95 48.4
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 5.3e-16 88.6 161 34.2
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.7e-14 83.6 63 65.1
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 1.7e-14 83.6 152 38.8
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 1.4e-13 80.5 75 52.0
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 3.2e-13 79.3 150 33.3
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 3.5e-12 75.9 117 34.2
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 4.6e-12 75.5 112 42.0
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 6.7e-11 71.6 127 30.7
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 1.1e-10 70.9 106 41.5
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 1.9e-10 70.1 75 46.7
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 1.7e-06 57.0 152 30.3
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 2.9e-06 56.2 120 30.8
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 5.0e-06 55.5 112 33.0
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 8.5e-06 54.7 125 32.0
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 8.5e-06 54.7 129 29.5


User provided reference genes

Program Settings