Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 3.6e-233 811.2 408 100.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.3e-174 616.7 403 76.9
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.4e-167 592.0 403 73.7
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 1.4e-152 543.5 400 68.8
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 4.0e-152 542.0 409 67.7
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.1e-146 523.9 400 65.0
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.8e-145 518.5 404 65.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.1e-144 517.3 405 64.9
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.9e-143 510.8 404 65.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 5.5e-141 505.0 427 62.8
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.0e-139 500.7 404 64.1
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.3e-139 499.6 401 62.8
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.5e-138 496.9 398 63.1
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.9e-138 496.5 401 64.6
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.5e-138 496.1 401 64.3
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.6e-137 493.4 402 64.7
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 4.0e-136 488.8 404 63.1
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.0e-136 488.8 373 68.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 6.9e-136 488.0 401 63.3
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 6.9e-136 488.0 408 61.8
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.6e-135 486.1 409 62.1
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 3.4e-135 485.7 401 64.3
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.5e-135 485.3 399 62.9
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.2e-134 483.0 401 61.6
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.5e-134 481.5 401 62.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 6.5e-134 481.5 396 63.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 5.5e-133 478.4 401 61.6
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 9.3e-133 477.6 399 63.9
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.2e-132 477.2 414 61.8
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 2.1e-132 476.5 404 60.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.3e-131 473.0 399 60.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.3e-131 473.0 399 60.9
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.1e-130 470.7 408 61.5
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.3e-130 469.2 399 60.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.3e-130 468.8 400 59.5
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 5.7e-130 468.4 400 60.0
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 5.7e-130 468.4 396 62.1
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.7e-130 467.6 399 60.7
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 9.7e-130 467.6 396 62.1
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-129 467.2 399 58.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.7e-129 465.7 401 59.4
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.8e-129 465.3 401 59.6
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-128 463.8 398 58.5
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-128 463.4 399 59.9
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-128 463.4 399 59.9
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.8e-128 463.4 460 55.0
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 5.3e-128 461.8 398 59.5
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 6.9e-128 461.5 401 58.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 6.9e-128 461.5 401 59.1
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.6e-127 459.5 409 58.4
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 5.9e-127 458.4 405 60.0
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 6.5e-126 454.9 399 58.6
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 4.2e-125 452.2 451 55.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.2e-125 452.2 398 57.5
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 7.2e-125 451.4 402 60.2
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 9.4e-125 451.1 400 59.2
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 9.4e-125 451.1 397 58.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.6e-124 450.3 397 59.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.6e-124 450.3 399 59.9
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.4e-123 447.2 400 58.5
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 5.1e-123 445.3 405 58.3
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.5e-122 443.7 395 58.0
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.0e-122 443.4 432 54.2
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 2.5e-122 443.0 395 57.7
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 3.3e-122 442.6 398 57.0
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.3e-121 440.7 383 62.4
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.8e-121 439.5 395 58.5
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.7e-121 439.1 395 56.5
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 6.3e-121 438.3 397 57.7
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 6.3e-121 438.3 396 57.3
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-120 437.2 411 56.4
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.3e-120 435.3 403 56.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.2e-119 434.1 403 55.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.4e-119 432.6 412 54.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 4.5e-119 432.2 402 57.0
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 5.9e-119 431.8 396 57.3
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 7.7e-119 431.4 405 56.8
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.7e-119 431.4 398 56.5
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 2.2e-118 429.9 398 57.3
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 2.9e-118 429.5 401 57.9
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.0e-118 428.7 403 55.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 6.5e-118 428.3 396 56.8
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.5e-117 426.4 406 57.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 7.2e-117 424.9 403 55.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.1e-116 423.3 411 57.7
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 4.7e-116 422.2 403 57.1
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 6.7e-115 418.3 401 58.4
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 8.8e-115 417.9 401 55.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 9.1e-112 407.9 402 57.0
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 2.9e-110 402.9 397 55.7
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 6.5e-110 401.7 397 55.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.5e-109 398.7 399 54.1
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 5.5e-109 398.7 418 51.9
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 2.1e-108 396.7 415 50.4
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.3e-105 387.5 294 64.3
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.1e-104 384.4 392 54.6
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.1e-104 384.4 404 52.5
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.2e-103 380.9 406 53.0
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.0e-103 380.2 395 53.7
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 3.5e-103 379.4 388 54.9
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.5e-103 379.4 401 53.1
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.3e-99 366.7 465 47.5
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 6.8e-99 365.2 408 52.0
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 4.5e-95 352.4 322 58.7
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 5.5e-93 345.5 465 44.9
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.6e-92 344.0 290 58.3
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.2e-90 337.8 394 49.5
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.8e-89 333.2 268 61.9
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 2.8e-89 333.2 406 51.2
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.8e-88 330.5 350 52.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 2.8e-84 316.6 404 45.5
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.0e-83 314.7 245 67.8
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 8.3e-81 305.1 422 41.5
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 5.6e-77 292.4 378 43.7
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 7.3e-77 292.0 413 44.1
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 9.2e-72 275.0 417 41.7
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.5e-69 267.7 380 43.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.5e-69 267.7 441 39.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.9e-69 267.3 463 37.4
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 3.9e-62 243.0 403 39.5
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-58 231.5 193 66.8
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.7e-57 226.5 224 58.5
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 4.9e-57 226.1 181 61.3
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-56 224.2 176 59.1
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 4.1e-56 223.0 302 47.7
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.1e-56 222.2 261 42.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 4.8e-44 183.0 174 51.7
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-43 181.4 155 58.7
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 1.2e-42 178.3 110 71.8
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.6e-42 177.2 171 52.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.8e-30 137.9 304 34.2
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.9e-29 134.4 176 48.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.3e-25 121.7 92 60.9
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 8.7e-22 109.0 186 40.9
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 6.2e-20 102.8 114 47.4
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-19 102.1 141 39.0
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 9.3e-16 89.0 93 49.5
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.1e-15 87.8 111 43.2
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.7e-12 77.0 65 60.0
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.7e-12 77.0 65 60.0
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-11 75.1 83 44.6
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.1e-11 73.9 53 66.0
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 5.3e-11 73.2 271 25.1
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 2.6e-10 70.9 112 42.0
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 2.6e-10 70.9 112 42.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.6e-07 60.5 154 35.1


User provided reference genes

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