Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.5e-121 439.5 216 100.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.1e-66 255.8 208 64.9
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.9e-66 254.2 210 64.3
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.6e-65 252.7 229 60.3
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 5.8e-65 251.5 222 59.9
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.0e-61 240.7 204 57.8
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 8.6e-61 237.7 215 58.1
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.3e-60 234.6 218 55.0
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.3e-60 234.6 218 55.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 9.5e-60 234.2 214 54.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.6e-59 233.4 218 55.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.7e-59 231.9 201 56.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.7e-59 231.9 217 53.5
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.4e-58 230.3 217 52.5
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.4e-58 230.3 215 53.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.4e-58 230.3 204 56.4
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.8e-58 229.9 214 53.3
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 8.9e-58 227.6 218 52.3
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.5e-57 226.9 214 53.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.0e-57 226.5 215 52.1
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 3.4e-57 225.7 216 52.8
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 4.4e-57 225.3 214 54.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.4e-57 225.3 207 54.1
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 7.5e-57 224.6 214 54.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.8e-57 224.2 212 53.8
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.2e-56 223.0 202 54.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 3.7e-56 222.2 202 55.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 6.4e-56 221.5 209 53.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.4e-55 220.3 215 52.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.4e-55 220.3 203 53.7
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.9e-55 219.9 212 51.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 4.1e-55 218.8 214 54.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.4e-55 218.4 213 52.1
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 9.2e-55 217.6 212 51.4
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 9.2e-55 217.6 212 51.4
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.2e-55 217.6 165 61.2
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.2e-54 217.2 213 53.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.6e-54 216.9 202 54.5
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.6e-54 216.9 199 53.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.6e-54 216.9 212 51.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.1e-54 216.5 214 53.3
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.1e-54 216.5 214 52.8
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-54 216.5 216 52.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 3.5e-54 215.7 215 52.1
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.5e-54 215.7 199 54.8
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.0e-54 214.9 212 52.4
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 7.8e-54 214.5 215 50.7
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.8e-54 214.5 203 51.2
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.3e-53 213.8 219 53.0
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.7e-53 213.4 211 50.7
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.7e-53 213.4 196 53.6
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.7e-53 213.4 175 57.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.3e-53 213.0 202 53.0
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.3e-53 213.0 202 53.0
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.3e-53 213.0 210 51.9
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.3e-53 213.0 217 52.1
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-53 212.2 209 51.2
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.9e-53 212.2 202 53.0
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.9e-53 212.2 213 52.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 3.9e-53 212.2 211 51.7
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.9e-53 212.2 214 52.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 5.1e-53 211.8 208 51.9
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.1e-53 211.8 211 52.6
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.1e-52 210.7 202 52.5
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.5e-52 210.3 202 52.5
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.5e-52 209.5 141 70.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.3e-52 209.1 196 53.6
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.3e-52 208.8 181 58.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 4.3e-52 208.8 208 51.0
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 5.6e-52 208.4 214 50.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 5.6e-52 208.4 206 51.0
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 7.3e-52 208.0 212 51.4
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 9.5e-52 207.6 210 51.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 9.5e-52 207.6 210 51.0
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.2e-51 207.2 138 68.8
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.1e-51 206.5 201 54.2
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.8e-51 206.1 199 52.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.8e-51 206.1 176 56.2
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.6e-51 205.7 197 53.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 6.2e-51 204.9 205 54.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.1e-51 204.5 203 49.8
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.1e-50 204.1 205 54.1
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.4e-50 203.8 203 50.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.8e-50 203.4 213 52.1
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.8e-50 203.4 201 51.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.1e-50 202.6 159 63.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 4.0e-50 202.2 212 51.4
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.8e-50 201.4 200 53.5
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.8e-50 201.4 200 53.5
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.5e-49 200.3 139 66.2
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-49 199.9 207 49.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.0e-49 199.9 216 50.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.0e-49 199.9 209 51.2
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 3.4e-49 199.1 158 60.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 4.4e-49 198.7 194 53.1
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.8e-49 198.4 197 51.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 7.6e-49 198.0 177 52.0
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 9.9e-49 197.6 198 51.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 9.9e-49 197.6 174 56.3
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.3e-48 197.2 218 49.1
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.9e-48 196.1 183 54.1
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-48 196.1 201 52.2
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.9e-48 196.1 211 51.2
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 3.8e-48 195.7 183 54.1
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.8e-48 195.7 185 51.9
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.8e-48 195.7 158 60.8
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.9e-48 195.3 207 50.7
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.9e-48 195.3 160 61.2
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.9e-48 195.3 215 49.8
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 6.4e-48 194.9 193 53.9
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 8.4e-48 194.5 212 48.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-47 194.1 207 50.7
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-47 194.1 207 50.7
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.1e-47 194.1 207 50.7
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.1e-47 194.1 172 52.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-47 194.1 198 50.5
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-47 193.7 187 53.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.4e-47 193.7 161 57.8
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-47 193.7 199 52.3
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.9e-47 193.4 192 52.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.9e-47 193.4 133 66.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 5.4e-47 191.8 197 52.3
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.2e-47 191.0 177 57.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.6e-46 190.3 203 48.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.6e-46 190.3 203 48.3
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-46 189.9 176 52.8
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.7e-46 189.5 215 46.5
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.6e-46 188.7 198 47.5
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.6e-46 188.7 164 55.5
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.6e-46 188.7 202 46.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 7.8e-46 188.0 198 48.5
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.0e-45 187.6 201 47.3
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.0e-45 187.6 194 51.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.0e-45 187.6 180 53.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.3e-45 186.4 221 47.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.9e-45 185.7 222 45.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 5.1e-45 185.3 196 50.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.1e-45 185.3 215 45.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.9e-44 183.3 137 61.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 4.3e-44 182.2 205 48.3
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 9.6e-44 181.0 205 46.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-43 180.3 196 47.4
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.1e-43 179.9 163 54.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.6e-43 179.1 206 46.1
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.4e-42 177.2 164 51.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.4e-42 176.4 173 49.1
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.5e-41 173.7 215 43.3
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.6e-41 172.9 194 49.0
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.4e-41 172.6 130 60.0
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.8e-40 169.1 159 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.9e-40 168.7 163 50.9
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 6.4e-40 168.3 142 54.9
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-39 167.2 213 46.0
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 4.2e-39 165.6 213 41.8
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.2e-39 165.6 161 49.1
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.3e-39 164.5 178 47.8
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.7e-37 160.2 123 59.3
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.3e-37 159.8 169 47.9
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.3e-35 154.1 175 47.4
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 3.6e-35 152.5 132 61.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.4e-34 150.6 179 45.8
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 6.9e-34 148.3 132 53.0
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.2e-32 143.3 203 40.9
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.8e-32 142.5 128 57.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.4e-31 140.6 103 62.1
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.5e-30 136.0 137 48.2
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.0e-29 132.9 128 53.1
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.8e-27 126.3 244 33.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.6e-27 125.9 200 40.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 7.6e-25 118.2 216 38.0
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 7.6e-25 118.2 216 38.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 7.6e-25 118.2 77 68.8
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.2e-24 116.7 87 62.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 7.1e-23 111.7 141 44.7
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.5e-22 109.4 196 37.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.8e-19 99.0 61 72.1
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-14 84.3 50 70.0
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 6.0e-14 82.0 52 71.2


User provided reference genes

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