Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 2.0e-164 582.4 303 100.0
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 3.5e-84 315.8 291 59.1
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 4.4e-63 245.7 313 47.9
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.9e-61 240.4 315 48.9
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 3.1e-56 223.0 318 46.2
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 1.9e-53 213.8 279 45.5
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 2.4e-53 213.4 299 44.1
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 1.1e-50 204.5 285 43.2
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 7.3e-50 201.8 283 43.8
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.8e-49 199.9 302 42.4
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 8.1e-49 198.4 305 42.0
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 1.4e-48 197.6 309 39.2
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 2.6e-47 193.4 315 39.7
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.4e-47 193.0 298 39.6
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 4.5e-47 192.6 312 39.1
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 5.8e-47 192.2 277 40.4
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 9.9e-47 191.4 277 41.5
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.1e-45 188.0 311 37.6
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 1.1e-45 188.0 309 42.4
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 9.3e-45 184.9 310 38.4
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 9.3e-45 184.9 289 40.1
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.5e-44 183.0 307 38.8
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 4.6e-44 182.6 313 37.7
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 4.6e-44 182.6 278 39.6
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.0e-44 182.2 312 36.9
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.3e-43 181.0 308 38.3
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.7e-43 178.7 307 38.1
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 2.5e-42 176.8 311 36.7
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 2.5e-42 176.8 296 38.2
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 3.3e-42 176.4 307 36.2
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 4.3e-42 176.0 275 39.6
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 5.6e-42 175.6 286 36.4
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 5.6e-42 175.6 287 38.0
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 5.6e-42 175.6 287 38.0
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.6e-41 174.1 286 37.8
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 4.8e-41 172.6 311 38.6
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.8e-40 170.6 312 34.9
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.8e-40 170.6 312 34.9
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 5.3e-40 169.1 302 37.7
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 6.9e-40 168.7 283 37.1
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.2e-39 167.9 283 36.7
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 3.4e-39 166.4 293 36.2
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 4.5e-39 166.0 281 35.9
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 4.5e-39 166.0 275 38.5
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 9.9e-39 164.9 283 36.0
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.3e-38 164.5 308 35.4
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 1.3e-38 164.5 306 37.3
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.2e-38 163.7 311 34.1
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 2.2e-38 163.7 283 36.4
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 3.8e-38 162.9 312 36.9
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 4.9e-38 162.5 288 35.8
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.9e-38 162.5 279 37.6
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 6.4e-38 162.2 318 39.0
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 4.2e-37 159.5 236 42.4
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 7.1e-37 158.7 278 38.5
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 7.1e-37 158.7 317 38.5
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.2e-36 157.9 318 35.8
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 1.2e-36 157.9 288 34.4
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 1.6e-36 157.5 281 36.7
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 2.1e-36 157.1 317 39.7
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 6.0e-36 155.6 281 36.7
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 6.0e-36 155.6 313 36.1
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 7.9e-36 155.2 282 36.2
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 1.0e-35 154.8 286 36.7
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 2.3e-35 153.7 283 33.9
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 3.0e-35 153.3 307 34.5
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 6.7e-35 152.1 341 31.7
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 8.7e-35 151.8 317 37.5
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 8.7e-35 151.8 280 35.4
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.1e-34 151.4 306 34.6
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.1e-34 151.4 307 34.9
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.5e-34 151.0 291 35.7
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 1.5e-34 151.0 273 35.9
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 1.9e-34 150.6 311 36.3
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.5e-34 150.2 315 34.3
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 3.3e-34 149.8 280 32.9
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 3.3e-34 149.8 275 37.1
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 7.4e-34 148.7 279 35.5
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 2.1e-33 147.1 281 35.6
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 2.8e-33 146.7 284 33.1
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 2.8e-33 146.7 310 34.2
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.8e-32 144.1 277 33.2
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.8e-32 144.1 286 34.3
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.8e-32 144.1 317 34.4
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 2.0e-31 140.6 272 34.9
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 7.6e-31 138.7 274 35.8
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 1.0e-30 138.3 272 34.2
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 2.2e-30 137.1 298 34.6
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 5.5e-29 132.5 275 33.5
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 2.1e-28 130.6 308 34.1
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 7.9e-28 128.6 226 37.2
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.0e-27 128.3 284 32.7
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.9e-26 124.0 300 31.7
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 1.9e-26 124.0 272 32.0
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.3e-26 122.9 272 32.4
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 7.4e-26 122.1 237 35.4
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 3.7e-25 119.8 279 31.5
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 1.1e-24 118.2 285 31.2
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 5.0e-22 109.4 238 31.5
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 5.1e-19 99.4 342 28.7
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 4.8e-17 92.8 273 27.5
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 7.7e-15 85.5 90 47.8
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.0e-14 82.8 117 45.3
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.0e-14 82.8 117 45.3
SalBow1G2857 Salvia bowleyana HOM05D007109 ORTHO05D008813 4.2e-13 79.7 68 55.9
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 5.5e-13 79.3 124 37.1
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 2.1e-12 77.4 122 41.0
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 1.5e-10 71.2 272 23.5
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 4.4e-10 69.7 284 25.4
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 4.4e-10 69.7 329 22.5
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 1.8e-08 64.3 299 22.4
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 1.8e-08 64.3 274 21.9
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 2.4e-08 63.9 79 44.3
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 4.1e-08 63.2 299 22.1
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 5.3e-08 62.8 284 24.3
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 1.2e-07 61.6 299 21.7
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 2.6e-07 60.5 292 21.9
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 3.4e-07 60.1 299 21.4
SEGI_04278 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 3.4e-07 60.1 309 21.0
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 4.5e-07 59.7 299 22.1
QL04p054979 Quercus lobata HOM05D002440 ORTHO05D002576 7.7e-07 58.9 303 20.5
CSS0035560 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 1.3e-06 58.2 275 19.6
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 1.3e-06 58.2 274 21.5
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 2.2e-06 57.4 301 22.3
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 2.9e-06 57.0 301 21.3
CsaV3_6G000840 Cucumis sativus L. HOM05D002440 ORTHO05D002576 2.9e-06 57.0 306 21.9
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 3.8e-06 56.6 298 21.8
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 3.8e-06 56.6 298 21.8
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 3.8e-06 56.6 298 21.8
CSS0042224 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 5.0e-06 56.2 270 21.5
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 5.0e-06 56.2 121 29.8
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 8.5e-06 55.5 279 21.5
Eucgr.D02314 Eucalyptus grandis HOM05D002440 ORTHO05D002576 8.5e-06 55.5 298 21.8


User provided reference genes

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