Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 6.6e-159 563.9 272 100.0
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 7.6e-115 417.5 249 83.1
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 1.6e-112 409.8 250 81.6
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 4.3e-110 401.7 249 79.5
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.2e-106 389.4 250 76.4
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.5e-105 386.0 247 76.1
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 3.9e-103 378.6 253 73.1
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 3.7e-101 372.1 246 73.6
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 8.2e-101 370.9 252 73.4
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 3.1e-100 369.0 241 72.2
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 6.9e-100 367.9 255 69.8
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 3.4e-99 365.5 249 71.1
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 4.5e-99 365.2 254 70.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.0e-98 364.0 246 72.4
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 1.0e-98 364.0 247 71.7
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 1.3e-98 363.6 249 71.9
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.7e-98 363.2 253 70.8
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 3.8e-98 362.1 254 68.5
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.1e-97 360.5 254 70.1
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.2e-97 359.0 249 70.3
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.2e-97 358.6 213 78.4
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.5e-97 358.2 248 70.2
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.2e-96 357.1 246 70.7
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.1e-96 356.3 244 70.1
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 6.1e-96 354.8 244 69.7
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 7.9e-96 354.4 244 69.7
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 3.0e-95 352.4 247 69.2
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.9e-95 352.1 244 68.9
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 6.7e-95 351.3 254 67.3
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.0e-94 349.7 248 69.8
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 2.6e-94 349.4 254 67.7
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 3.3e-94 349.0 261 63.2
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.7e-94 348.2 249 68.3
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 9.7e-94 347.4 244 70.1
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.1e-92 344.0 216 75.0
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 1.8e-92 343.2 233 71.7
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.4e-92 342.8 271 64.6
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 1.2e-91 340.5 241 66.8
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 1.6e-91 340.1 235 70.2
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.0e-90 337.4 269 64.7
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.3e-90 337.0 244 66.8
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.7e-90 336.7 247 66.8
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 6.5e-90 334.7 247 66.0
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 8.5e-90 334.3 240 64.6
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.5e-90 334.3 247 65.6
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.5e-89 333.6 240 64.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.5e-89 333.6 244 66.4
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.5e-89 332.8 279 61.3
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 7.2e-89 331.3 246 64.6
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 7.2e-89 331.3 292 57.5
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 9.4e-89 330.9 250 66.0
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 3.6e-88 328.9 248 64.5
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 4.7e-88 328.6 238 68.5
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 8.0e-88 327.8 326 54.0
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 6.7e-87 324.7 218 70.6
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.1e-86 323.9 218 71.6
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.0e-86 323.2 218 71.6
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.6e-86 322.8 218 71.6
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 7.5e-86 321.2 249 63.1
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 7.5e-86 321.2 231 68.0
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 1.3e-85 320.5 201 76.6
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.7e-85 320.1 223 67.7
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 4.8e-85 318.5 218 70.2
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 8.2e-85 317.8 300 55.7
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 8.2e-85 317.8 270 60.0
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.4e-84 317.0 218 69.7
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 2.4e-84 316.2 269 60.6
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 5.3e-84 315.1 243 65.4
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 1.2e-83 313.9 245 65.3
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.2e-83 313.9 242 66.5
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 1.6e-83 313.5 240 65.4
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 7.7e-83 311.2 197 73.1
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.9e-82 309.3 234 62.4
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.9e-82 309.3 247 62.8
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 3.8e-82 308.9 199 71.9
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 5.0e-82 308.5 227 67.8
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 6.5e-82 308.1 234 62.0
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 1.9e-81 306.6 242 62.8
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 3.2e-81 305.8 225 68.0
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 9.4e-81 304.3 243 63.8
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 6.1e-80 301.6 244 61.9
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.2e-78 297.4 223 65.5
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.0e-78 296.6 226 65.5
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 7.5e-78 294.7 221 66.5
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 4.8e-77 292.0 225 63.6
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 4.8e-77 292.0 225 63.6
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 4.8e-77 292.0 225 63.6
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 4.8e-77 292.0 225 63.6
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.4e-76 290.4 244 59.8
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 5.4e-76 288.5 227 63.9
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 5.4e-76 288.5 225 62.7
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 9.1e-76 287.7 224 64.7
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 9.1e-76 287.7 280 54.3
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.2e-75 287.3 252 55.6
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 1.0e-74 284.3 221 63.8
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.3e-74 283.9 285 50.9
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.3e-74 283.9 194 68.0
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.7e-74 283.5 245 57.6
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 2.2e-74 283.1 194 67.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 2.2e-74 283.1 241 58.9
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 4.2e-73 278.9 196 66.3
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 9.4e-73 277.7 164 78.0
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.3e-71 273.1 252 52.8
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 3.0e-71 272.7 194 64.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.2e-67 260.8 247 53.8
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.6e-67 260.4 251 54.6
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 5.6e-65 251.9 246 52.4
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.8e-63 246.9 249 51.0
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 7.5e-62 241.5 246 50.4
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 9.2e-60 234.6 192 57.3
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 1.3e-53 214.2 252 48.8
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 2.7e-43 179.9 148 60.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 1.8e-39 167.2 189 41.3
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 3.1e-39 166.4 189 41.8
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 1.5e-30 137.5 111 64.0
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 7.6e-30 135.2 151 40.4
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 9.3e-28 128.3 177 37.9
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 1.4e-15 87.8 87 49.4


User provided reference genes

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