Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 6.7e-255 883.6 487 100.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.4e-196 689.1 488 77.0
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 6.4e-189 664.5 498 70.9
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.0e-186 655.6 498 70.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.0e-182 642.9 493 68.8
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.0e-175 618.6 493 65.3
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 7.6e-174 614.4 494 65.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.4e-172 610.1 493 65.9
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.1e-170 601.7 505 64.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 8.7e-170 600.9 499 67.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.5e-169 600.1 405 76.3
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 4.3e-169 598.6 499 67.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.8e-168 595.9 544 61.0
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.8e-168 595.1 492 62.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 3.1e-167 592.4 493 64.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.4e-166 589.0 492 62.4
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 5.9e-166 588.2 494 66.4
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.3e-165 587.0 495 64.2
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-165 587.0 511 65.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.1e-163 579.7 492 62.2
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 8.7e-162 574.3 494 63.8
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.5e-161 573.5 493 63.9
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.7e-161 571.6 494 63.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.1e-159 564.3 489 64.8
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 9.1e-159 564.3 488 61.3
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.4e-158 562.4 494 60.7
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 4.5e-158 562.0 493 60.9
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.1e-156 557.4 505 59.6
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.1e-156 557.4 492 60.8
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.6e-155 553.5 491 59.5
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.1e-155 553.1 491 58.9
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.4e-154 550.4 498 59.2
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.4e-154 550.4 492 61.2
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.4e-154 550.4 492 60.2
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 5.1e-154 548.5 491 60.9
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.7e-153 545.0 492 59.8
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 7.4e-153 544.7 491 58.2
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.2e-152 543.1 491 60.5
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 8.2e-152 541.2 496 62.9
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.4e-151 540.4 501 59.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.8e-151 540.0 464 61.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.5e-150 537.0 492 59.3
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 2.0e-150 536.6 492 59.6
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.0e-149 534.3 464 60.8
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.7e-149 533.5 492 58.3
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.6e-147 526.9 495 61.4
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.1e-147 526.6 498 62.2
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 2.7e-147 526.2 488 59.6
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.6e-147 525.8 492 57.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.1e-145 520.8 493 57.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.1e-145 520.8 493 56.0
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.8e-144 515.4 489 57.3
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.8e-144 515.4 453 64.9
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.8e-144 515.4 492 61.4
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.4e-143 513.8 438 61.2
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.1e-143 512.3 421 62.5
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.1e-143 512.3 501 59.9
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.2e-142 510.8 487 56.1
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.2e-142 510.8 431 65.9
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.6e-142 509.6 487 58.3
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.9e-141 506.1 492 57.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 8.5e-141 504.6 465 58.9
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.5e-140 503.1 505 57.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 9.4e-140 501.1 487 54.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.2e-139 500.7 446 63.7
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.0e-139 498.0 497 55.1
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.0e-138 496.1 496 57.1
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.8e-138 494.6 492 55.5
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-137 493.8 492 54.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.4e-137 492.3 487 54.0
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.8e-136 489.6 492 53.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.4e-135 487.3 487 55.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.4e-135 487.3 506 52.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.4e-135 487.3 450 62.4
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.8e-135 486.9 492 53.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 2.4e-135 486.5 491 54.4
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.1e-135 485.7 484 53.1
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.6e-134 483.8 523 51.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-133 480.7 478 53.3
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.8e-133 479.2 492 53.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.5e-132 476.5 493 52.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.6e-131 473.8 515 50.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.7e-131 473.0 593 47.6
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 2.7e-131 473.0 492 54.3
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 6.1e-131 471.9 492 53.0
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 8.0e-131 471.5 500 52.0
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.6e-129 466.5 492 51.2
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-129 466.5 478 52.5
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 4.4e-129 465.7 448 56.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 8.3e-128 461.5 438 57.1
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 7.0e-127 458.4 493 52.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.0e-126 456.8 491 55.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 6.5e-125 451.8 470 53.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-124 451.1 511 51.7
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-124 451.1 492 53.3
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 4.2e-124 449.1 480 51.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.2e-124 449.1 496 52.2
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 5.5e-124 448.7 488 53.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 9.5e-124 448.0 482 57.1
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.2e-123 447.6 499 52.9
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.6e-123 447.2 487 49.9
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-123 446.8 488 51.6
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-123 446.4 488 53.7
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 8.0e-123 444.9 452 56.2
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.8e-122 443.7 493 52.9
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.3e-122 443.4 494 48.8
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 4.0e-122 442.6 488 51.2
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.8e-122 441.4 495 50.7
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.8e-121 438.0 480 53.1
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.7e-120 436.0 492 53.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 4.9e-120 435.6 489 50.1
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.4e-119 433.3 491 52.7
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.2e-118 431.0 525 48.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.6e-118 430.6 487 53.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.6e-118 430.6 453 51.2
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 3.5e-118 429.5 396 63.9
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 5.9e-118 428.7 489 50.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.5e-116 424.1 457 55.1
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.0e-114 416.4 388 55.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.0e-114 416.0 474 52.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-113 414.5 490 50.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 9.8e-113 411.4 492 50.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.8e-113 411.4 452 54.0
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.3e-112 411.0 497 49.1
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.2e-112 410.2 403 53.8
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.2e-111 406.4 540 45.0
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.1e-111 406.0 540 45.0
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 5.9e-110 402.1 447 52.6
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.3e-109 400.2 488 50.2
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.9e-109 399.4 500 46.8
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.4e-106 391.0 492 47.4
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-101 374.8 494 45.5
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.0e-101 374.8 494 48.4
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 5.8e-97 359.0 494 47.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 2.2e-88 330.5 216 74.5
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 9.2e-87 325.1 216 73.1
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.2e-83 314.7 326 50.0
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.2e-83 314.7 412 48.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 9.0e-82 308.5 222 67.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-81 308.1 411 46.0
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.2e-81 308.1 453 37.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 3.8e-80 303.1 349 49.0
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 6.4e-80 302.4 446 39.5
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.1e-78 297.4 296 50.3
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.6e-76 288.5 294 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.6e-70 269.6 309 44.7
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-62 245.0 164 72.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-55 221.9 156 72.4
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-50 204.5 135 70.4
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 7.4e-44 182.6 235 48.1
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.8e-37 161.4 315 39.0
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.3e-37 161.0 275 39.6
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.1e-34 152.1 247 35.2
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 2.2e-32 144.4 230 48.7
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.2e-31 140.2 94 68.1
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 8.8e-29 132.5 244 30.7
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 7.0e-26 122.9 190 34.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.5e-25 120.6 123 57.7
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.8e-24 117.1 73 69.9
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 5.5e-23 113.2 76 65.8
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 9.1e-18 95.9 117 50.4
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 7.2e-15 86.3 231 26.8
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 9.4e-15 85.9 56 67.9
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.4e-12 77.4 100 47.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.2e-09 68.9 74 51.4
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.3e-08 65.5 43 72.1
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 3.8e-08 63.9 49 57.1


User provided reference genes

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