Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.1e-97 359.4 232 100.0
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 2.5e-82 309.3 232 85.8
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 6.4e-78 294.7 229 76.0
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.1e-77 293.9 229 81.2
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 1.4e-77 293.5 229 79.5
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 1.2e-76 290.4 228 78.9
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.6e-76 290.0 227 75.3
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 3.5e-76 288.9 229 74.7
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 2.3e-75 286.2 228 77.6
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 3.0e-75 285.8 227 78.9
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 3.9e-75 285.4 227 75.3
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 5.0e-75 285.0 228 82.0
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 6.6e-75 284.6 229 69.9
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 1.9e-74 283.1 229 79.0
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 5.6e-74 281.6 228 76.3
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 7.3e-74 281.2 229 76.9
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 9.5e-74 280.8 229 77.7
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.2e-73 280.4 230 75.7
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.6e-73 280.0 228 78.5
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.6e-73 280.0 228 65.4
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 4.7e-73 278.5 229 70.3
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 6.2e-73 278.1 230 75.2
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 6.2e-73 278.1 230 82.2
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 8.1e-73 277.7 227 72.2
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.1e-72 277.3 225 79.6
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.5e-71 273.5 229 72.9
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.4e-71 271.9 229 76.4
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.4e-71 271.9 229 76.4
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.3e-70 270.4 226 75.2
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 8.3e-70 267.7 228 68.0
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 8.3e-70 267.7 232 71.6
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.4e-69 266.9 228 76.8
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 1.9e-69 266.5 232 71.1
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 2.4e-69 266.2 229 75.5
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 2.4e-69 266.2 229 74.2
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.2e-69 265.8 225 78.7
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 3.2e-69 265.8 226 77.0
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 5.4e-69 265.0 226 71.7
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.2e-68 263.8 227 76.7
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.5e-68 262.3 229 69.9
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 4.6e-68 261.9 229 76.9
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 6.0e-68 261.5 229 70.3
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 7.8e-68 261.2 229 76.9
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.7e-67 260.0 222 80.6
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 2.3e-67 259.6 229 75.1
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 5.1e-67 258.5 230 70.0
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 6.6e-67 258.1 230 75.2
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.1e-66 257.3 229 77.3
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 4.3e-66 255.4 226 75.7
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 5.6e-66 255.0 226 74.8
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.3e-66 254.6 229 75.5
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.2e-65 253.8 226 75.2
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.6e-65 253.4 245 71.8
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.8e-65 252.7 230 74.8
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 4.7e-65 251.9 228 72.8
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 6.2e-65 251.5 230 75.7
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.2e-65 251.5 230 75.2
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 8.9e-64 247.7 226 69.5
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.0e-63 246.5 248 68.5
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.6e-63 246.1 227 75.3
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 7.6e-63 244.6 229 73.4
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 9.9e-63 244.2 228 74.1
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 2.9e-62 242.7 229 74.7
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 3.8e-62 242.3 228 71.1
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 4.9e-62 241.9 228 70.6
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 4.9e-62 241.9 228 72.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 6.4e-62 241.5 229 74.2
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 6.4e-62 241.5 258 67.8
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 8.4e-62 241.1 227 67.0
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 4.1e-61 238.8 229 72.5
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.7e-60 236.1 229 66.4
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 4.6e-60 235.3 232 73.7
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.3e-59 233.8 234 63.2
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 2.3e-59 233.0 229 72.1
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 3.9e-59 232.3 229 65.1
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 5.1e-59 231.9 230 73.0
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 5.1e-59 231.9 229 68.1
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 2.5e-58 229.6 232 72.4
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 7.3e-58 228.0 229 72.1
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 2.8e-57 226.1 228 68.4
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.6e-57 225.7 229 62.4
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 6.2e-57 224.9 229 70.3
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 229 69.0
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 2.0e-55 219.9 228 68.4
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 3.4e-55 219.2 236 67.8
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 4.4e-55 218.8 228 70.2
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 5.8e-55 218.4 227 71.4
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.7e-54 216.9 228 64.5
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 2.9e-54 216.1 331 54.4
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 6.4e-54 214.9 223 53.8
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 6.4e-54 214.9 230 56.1
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 4.6e-52 208.8 231 53.2
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.0e-51 206.1 226 69.0
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 3.9e-51 205.7 226 69.9
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 5.1e-51 205.3 227 68.7
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.5e-50 203.8 231 56.7
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.5e-50 203.8 230 49.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.5e-50 203.0 226 68.1
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 3.3e-50 202.6 229 68.6
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.6e-50 201.8 154 66.9
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 7.3e-50 201.4 230 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 3.6e-49 199.1 230 56.5
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.8e-49 198.7 226 66.8
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 1.4e-48 197.2 226 65.9
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.4e-48 197.2 226 65.9
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.2e-47 194.1 228 59.2
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 2.0e-47 193.4 226 65.9
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.0e-47 193.4 228 59.2
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 4.5e-47 192.2 226 65.5
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.2e-46 189.9 226 58.8
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 1.4e-45 187.2 211 69.2
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 7.1e-45 184.9 227 58.1
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 9.3e-45 184.5 228 53.1
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 3.5e-44 182.6 226 67.3
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 4.6e-44 182.2 229 61.1
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.7e-38 163.7 188 61.7
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 6.4e-38 161.8 99 73.7
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.4e-32 144.1 231 44.6
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.4e-31 139.4 226 49.1
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.2e-28 131.0 226 41.2
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 6.0e-28 128.6 65 89.2
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.9e-26 123.6 105 77.1
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 2.6e-23 113.2 68 79.4
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.0e-22 111.3 96 58.3
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 2.9e-22 109.8 225 36.4
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 9.4e-21 104.8 232 35.3
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 3.9e-19 99.4 226 42.9
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 8.2e-17 91.7 162 38.9
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.3e-09 67.8 40 77.5
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 5.0e-06 55.8 83 39.8
CDE09G1089 Ceratophyllum demersum HOM05D003023 ORTHO05D003412 6.5e-06 55.5 77 67.5


User provided reference genes

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