Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16806 Avicennia marina HOM05D001555 ORTHO05D088047 2.4e-89 332.0 153 100.0
Oeu003719.1 Olea europaea HOM05D001555 ORTHO05D001616 6.6e-23 111.3 88 63.6
SalBow6G0608 Salvia bowleyana HOM05D001555 ORTHO05D001616 1.1e-20 104.0 91 64.8
Dinv42066 Davidia involucrata HOM05D001555 ORTHO05D001616 2.2e-18 96.3 83 63.9
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 6.4e-18 94.7 83 62.7
DCAR_003675 Daucus carota HOM05D001555 ORTHO05D001616 1.1e-17 94.0 85 57.6
Hma1.2p1_0066F.1_g036430 Hydrangea macrophylla HOM05D001555 ORTHO05D001616 2.4e-17 92.8 83 62.7
Cfa005005 Carpinus fangiana HOM05D001555 ORTHO05D001616 4.1e-17 92.0 83 62.7
QL11p043655 Quercus lobata HOM05D001555 ORTHO05D001616 2.7e-16 89.4 83 60.2
GSVIVG01031964001 Vitis vinifera HOM05D001555 ORTHO05D001616 4.6e-16 88.6 83 60.2
Solyc01g109610.4 Solanum lycopersicum HOM05D001555 ORTHO05D001616 1.7e-15 86.7 83 57.8
Migut.B00237 Erythranthe guttata HOM05D001555 ORTHO05D001616 6.6e-15 84.7 90 55.6
Sopen01g051800 Solanum pennellii HOM05D001555 ORTHO05D001616 8.6e-15 84.3 80 57.5
Nitab4.5_0004172g0140 Nicotiana tabacum HOM05D001555 ORTHO05D001616 1.1e-14 84.0 80 56.2
PGSC0003DMG400000725 Solanum tuberosum HOM05D001555 ORTHO05D001616 1.5e-14 83.6 80 57.5
CSS0011140 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 2.5e-14 82.8 82 57.3
Nitab4.5_0000308g0070 Nicotiana tabacum HOM05D001555 ORTHO05D001616 5.6e-14 81.6 81 54.3
Thecc.02G085500 Theobroma cacao HOM05D001555 ORTHO05D001616 5.6e-14 81.6 83 56.6
CiPaw.06G135400 Carya illinoinensis HOM05D001555 ORTHO05D001616 7.3e-14 81.3 83 55.4
Duzib052G1057 Durio zibethinus HOM05D001555 ORTHO05D001616 7.3e-14 81.3 83 56.6
Dinv23522 Davidia involucrata HOM05D001555 ORTHO05D001616 1.2e-13 80.5 73 63.0
CiPaw.05G064300 Carya illinoinensis HOM05D001555 ORTHO05D001616 3.6e-13 79.0 83 55.4
HanXRQChr03g0061161 Helianthus annuus HOM05D001555 ORTHO05D001616 3.6e-13 79.0 71 56.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 4.7e-13 78.6 85 51.8
CAN.G1412.5 Capsicum annuum HOM05D001555 ORTHO05D001616 6.2e-13 78.2 73 54.8
Lsat_1_v5_gn_9_109621 Lactuca sativa HOM05D001555 ORTHO05D001616 1.1e-12 77.4 84 53.6
Manes.17G100900 Manihot esculenta HOM05D001555 ORTHO05D001616 1.1e-12 77.4 82 52.4
Cpa.g.sc62.149 Carica papaya HOM05D001555 ORTHO05D001616 1.4e-12 77.0 83 53.0
Peaxi162Scf00016g00824 Petunia axillaris HOM05D001555 ORTHO05D001616 1.4e-12 77.0 80 53.8
TPR.G19410 Trifolium pratense HOM05D001555 ORTHO05D001616 1.4e-12 77.0 78 55.1
arahy.Tifrunner.gnm1.ann1.E51K97 Arachis hypogaea HOM05D001555 ORTHO05D001616 1.8e-12 76.6 83 54.2
Ca_20874_v3 Cicer arietinum L. HOM05D001555 ORTHO05D001616 1.8e-12 76.6 78 55.1
Lj3g0022860 Lotus japonicus HOM05D001555 ORTHO05D001616 3.1e-12 75.9 83 54.2
arahy.Tifrunner.gnm1.ann1.61FCXV Arachis hypogaea HOM05D001555 ORTHO05D001616 4.0e-12 75.5 73 56.2
CSS0045078 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 4.0e-12 75.5 82 52.4
CAN.G1139.14 Capsicum annuum HOM05D001555 ORTHO05D001616 4.0e-12 75.5 83 49.4
Eucgr.I01268 Eucalyptus grandis HOM05D001555 ORTHO05D001616 4.0e-12 75.5 84 50.0
Glyma.12G043400 Glycine max HOM05D001555 ORTHO05D001616 4.0e-12 75.5 73 57.5
Oeu000773.1 Olea europaea HOM05D001555 ORTHO05D001616 4.0e-12 75.5 77 53.2
Oeu000774.1 Olea europaea HOM05D001555 ORTHO05D001616 4.0e-12 75.5 77 53.2
Phvul.011G045400 Phaseolus vulgaris HOM05D001555 ORTHO05D001616 4.0e-12 75.5 83 55.4
Glyma.11G118000 Glycine max HOM05D001555 ORTHO05D001616 6.8e-12 74.7 73 56.2
Nitab4.5_0006280g0030 Nicotiana tabacum HOM05D001555 ORTHO05D001616 6.8e-12 74.7 83 49.4
COL.COLO4_25929 Corchorus olitorius HOM05D001555 ORTHO05D001616 8.9e-12 74.3 84 53.6
Sabra09G0088900 Salix brachista HOM05D001555 ORTHO05D001616 8.9e-12 74.3 82 52.4
TWI75G1361 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 8.9e-12 74.3 82 48.8
Cc10_g02910 Coffea canephora HOM05D001555 ORTHO05D001616 1.2e-11 73.9 83 49.4
Nitab4.5_0005730g0020 Nicotiana tabacum HOM05D001555 ORTHO05D001616 1.2e-11 73.9 83 48.2
Gohir.D13G032800 Gossypium hirsutum HOM05D001555 ORTHO05D001616 1.5e-11 73.6 86 52.3
Gorai.013G037200 Gossypium raimondii HOM05D001555 ORTHO05D001616 1.5e-11 73.6 86 52.3
VMungo1127G1246 Vigna mungo HOM05D001555 ORTHO05D001616 1.5e-11 73.6 83 54.2
Ciclev10028884m.g Citrus clementina HOM05D001555 ORTHO05D001616 2.0e-11 73.2 83 54.2
Medtr4g070020 Medicago truncatula HOM05D001555 ORTHO05D001616 2.0e-11 73.2 78 52.6
Dinv36078 Davidia involucrata HOM05D001555 ORTHO05D001616 2.6e-11 72.8 83 49.4
Lalb_Chr19g0138631 Lupinus albus HOM05D001555 ORTHO05D001616 2.6e-11 72.8 73 56.2
Gohir.A13G034400 Gossypium hirsutum HOM05D001555 ORTHO05D001616 3.4e-11 72.4 86 51.2
Peaxi162Scf00417g01211 Petunia axillaris HOM05D001555 ORTHO05D001616 3.4e-11 72.4 83 48.2
Psat7g184680 Pisum sativum HOM05D001555 ORTHO05D001616 3.4e-11 72.4 78 53.8
Hund06232 Selenicereus undatus HOM05D001555 ORTHO05D001616 3.4e-11 72.4 84 54.8
Nitab4.5_0002296g0060 Nicotiana tabacum HOM05D001555 ORTHO05D001616 5.8e-11 71.6 83 47.0
Nitab4.5_0005373g0040 Nicotiana tabacum HOM05D001555 ORTHO05D001616 5.8e-11 71.6 83 48.2
Solyc04g080300.4 Solanum lycopersicum HOM05D001555 ORTHO05D001616 5.8e-11 71.6 83 45.8
Sopen04g033900 Solanum pennellii HOM05D001555 ORTHO05D001616 5.8e-11 71.6 83 47.0
Peaxi162Scf00064g00427 Petunia axillaris HOM05D001555 ORTHO05D001616 9.9e-11 70.9 79 50.6
MSTRG.24289 Avicennia marina HOM05D001555 ORTHO05D001616 1.7e-10 70.1 81 49.4
CAN.G1226.9 Capsicum annuum HOM05D001555 ORTHO05D001616 2.2e-10 69.7 83 44.6
Lalb_Chr01g0002561 Lupinus albus HOM05D001555 ORTHO05D001616 2.2e-10 69.7 73 53.4
PGSC0003DMG400015456 Solanum tuberosum HOM05D001555 ORTHO05D001616 2.2e-10 69.7 84 47.6
TAR376G0116 Trochodendron aralioides HOM05D001555 ORTHO05D001616 2.2e-10 69.7 83 53.0
Oeu007018.1 Olea europaea HOM05D001555 ORTHO05D001616 2.9e-10 69.3 74 51.4
PGSC0003DMG400005136 Solanum tuberosum HOM05D001555 ORTHO05D001616 2.9e-10 69.3 83 45.8
Atru.chr5.3013 Acer truncatum HOM05D001555 ORTHO05D001616 3.8e-10 68.9 74 54.1
CSS0000270 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 3.8e-10 68.9 82 47.6
CSS0017756 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 3.8e-10 68.9 82 47.6
CANSAT80G1551 Cannabis sativa HOM05D001555 ORTHO05D001616 4.9e-10 68.6 84 51.2
Potri.009G115800 Populus trichocarpa HOM05D001555 ORTHO05D001616 4.9e-10 68.6 82 51.2
QL12p018928 Quercus lobata HOM05D001555 ORTHO05D001616 4.9e-10 68.6 64 59.4
Sopen12g031010 Solanum pennellii HOM05D001555 ORTHO05D001616 6.4e-10 68.2 84 47.6
Solyc12g089140.2 Solanum lycopersicum HOM05D001555 ORTHO05D001616 8.4e-10 67.8 84 47.6
Prupe.8G097300 Prunus persica HOM05D001555 ORTHO05D001616 1.1e-09 67.4 77 49.4
Rhsim11G0176900 Rhododendron simsii HOM05D001555 ORTHO05D001616 1.4e-09 67.0 74 55.4
MD10G1076500 Malus domestica HOM05D001555 ORTHO05D001616 1.9e-09 66.6 71 52.1
Sc02g0006130 Simmondsia chinensis HOM05D001555 ORTHO05D001616 1.9e-09 66.6 83 45.8
AUR62011325 Chenopodium quinoa HOM05D001555 ORTHO05D001616 2.4e-09 66.2 80 52.5
AUR62016735 Chenopodium quinoa HOM05D001555 ORTHO05D001616 2.4e-09 66.2 80 52.5
FAN20G1922 Fragaria x ananassa HOM05D001555 ORTHO05D001616 4.1e-09 65.5 84 45.2
TAR628G0872 Trochodendron aralioides HOM05D001555 ORTHO05D001616 4.1e-09 65.5 84 48.8
Cc02_g17580 Coffea canephora HOM05D001555 ORTHO05D001616 5.4e-09 65.1 78 55.1
Lalb_Chr03g0025711 Lupinus albus HOM05D001555 ORTHO05D001616 5.4e-09 65.1 73 52.1
RcHm_v2.0_Chr6g0264221 Rosa chinensis HOM05D001555 ORTHO05D001616 5.4e-09 65.1 68 54.4
TAR381G1049 Trochodendron aralioides HOM05D001555 ORTHO05D001616 5.4e-09 65.1 83 48.2
Ciclev10001904m.g Citrus clementina HOM05D001555 ORTHO05D001616 9.2e-09 64.3 74 52.7
DCAR_008756 Daucus carota HOM05D001555 ORTHO05D001616 9.2e-09 64.3 83 42.2
Oeu047778.1 Olea europaea HOM05D001555 ORTHO05D001616 9.2e-09 64.3 75 49.3
Hund00269 Selenicereus undatus HOM05D001555 ORTHO05D001616 9.2e-09 64.3 84 48.8
FAN27G1850 Fragaria x ananassa HOM05D001555 ORTHO05D001616 1.2e-08 63.9 84 45.2
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.6e-08 63.5 50 68.0
vmacro02109 Vaccinium macrocarpon HOM05D001555 ORTHO05D001616 1.6e-08 63.5 73 53.4
PSO541G5052 Papaver somniferum HOM05D001555 ORTHO05D001616 2.1e-08 63.2 84 41.7
FvH4_2g39840 Fragaria vesca HOM05D001555 ORTHO05D001616 2.7e-08 62.8 87 43.7
PSO675G7737 Papaver somniferum HOM05D001555 ORTHO05D001616 2.7e-08 62.8 84 41.7
RcHm_v2.0_Chr6g0301001 Rosa chinensis HOM05D001555 ORTHO05D001616 3.5e-08 62.4 84 44.0
Aqoxy6G01105 Aquilegia oxysepala HOM05D001555 ORTHO05D001616 7.8e-08 61.2 83 41.0
MSTRG.25169 Avicennia marina HOM05D001555 ORTHO05D001616 7.8e-08 61.2 83 43.4
BcaB03g14445 Brassica carinata HOM05D001555 ORTHO05D001616 1.3e-07 60.5 83 41.0
AT1G19400 Arabidopsis thaliana HOM05D001555 ORTHO05D001616 1.7e-07 60.1 61 47.5
Manes.05G159800 Manihot esculenta HOM05D001555 ORTHO05D001616 1.7e-07 60.1 74 47.3
HanXRQChr02g0042101 Helianthus annuus HOM05D001555 ORTHO05D001616 2.3e-07 59.7 74 41.9
MD05G1066500 Malus domestica HOM05D001555 ORTHO05D001616 2.3e-07 59.7 67 50.7
ECA232G3268 Erigeron canadensis HOM05D001555 ORTHO05D001616 3.0e-07 59.3 73 42.5
FvH4_2g08760 Fragaria vesca HOM05D001555 ORTHO05D001616 3.0e-07 59.3 53 56.6
FAN15G0075 Fragaria x ananassa HOM05D001555 ORTHO05D001616 3.0e-07 59.3 84 42.9
FAN24G1343 Fragaria x ananassa HOM05D001555 ORTHO05D001616 3.0e-07 59.3 53 56.6
Carub.0001s1899 Capsella rubella HOM05D001555 ORTHO05D001616 3.9e-07 58.9 78 43.6
Thhalv10008308m.g Eutrema salsugineum HOM05D001555 ORTHO05D001616 3.9e-07 58.9 61 47.5
FAN15G3725 Fragaria x ananassa HOM05D001555 ORTHO05D001616 3.9e-07 58.9 53 56.6
FAN27G2124 Fragaria x ananassa HOM05D001555 ORTHO05D001616 3.9e-07 58.9 53 56.6
MD15G1028000 Malus domestica HOM05D001555 ORTHO05D001616 3.9e-07 58.9 78 46.2
Gohir.A05G194300 Gossypium hirsutum HOM05D001555 ORTHO05D001616 5.1e-07 58.5 78 48.7
Aa31LG7G4120 Aethionema arabicum HOM05D001555 ORTHO05D001616 6.6e-07 58.2 84 46.4
BcaB07g31946 Brassica carinata HOM05D001555 ORTHO05D001616 6.6e-07 58.2 73 42.5
Cpa.g.sc36.73 Carica papaya HOM05D001555 ORTHO05D001616 6.6e-07 58.2 74 51.4
COL.COLO4_26322 Corchorus olitorius HOM05D001555 ORTHO05D001616 6.6e-07 58.2 75 46.7
Eucgr.F01567 Eucalyptus grandis HOM05D001555 ORTHO05D001616 6.6e-07 58.2 75 45.3
Duzib093G1024 Durio zibethinus HOM05D001555 ORTHO05D001616 1.1e-06 57.4 79 49.4
THA.LOC104806944 Tarenaya hassleriana HOM05D001555 ORTHO05D001616 1.1e-06 57.4 83 36.1
BcaC05g25827 Brassica carinata HOM05D001555 ORTHO05D001616 1.5e-06 57.0 83 41.0
C05p17820 Brassica napus HOM05D001555 ORTHO05D001616 1.5e-06 57.0 83 41.0
Oeu002833.2 Olea europaea HOM05D001555 ORTHO05D001616 1.5e-06 57.0 83 45.8
Prupe.1G379700 Prunus persica HOM05D001555 ORTHO05D001616 1.5e-06 57.0 74 45.9
Sc14g0002080 Simmondsia chinensis HOM05D001555 ORTHO05D001616 1.5e-06 57.0 77 48.1
AL1G32020 Arabidopsis lyrata HOM05D001555 ORTHO05D001616 2.5e-06 56.2 79 40.5
A06p15560 Brassica napus HOM05D001555 ORTHO05D001616 2.5e-06 56.2 83 41.0
BraA06t24666Z Brassica rapa HOM05D000031 ORTHO05D001616 2.5e-06 56.2 83 41.0
CANSAT25G0359 Cannabis sativa HOM05D001555 ORTHO05D001616 2.5e-06 56.2 74 45.9
FAN20G2300 Fragaria x ananassa HOM05D001555 ORTHO05D001616 2.5e-06 56.2 53 54.7
MD08G1032000 Malus domestica HOM05D001555 ORTHO05D001616 2.5e-06 56.2 74 45.9
Gohir.D05G197500 Gossypium hirsutum HOM05D001555 ORTHO05D001616 3.3e-06 55.8 80 47.5
Gorai.009G202400 Gossypium raimondii HOM05D001555 ORTHO05D001616 3.3e-06 55.8 80 47.5
BolC5t30487H Brassica oleracea HOM05D001555 ORTHO05D001616 4.3e-06 55.5 83 39.8
ECA232G0314 Erigeron canadensis HOM05D001555 ORTHO05D001616 4.3e-06 55.5 67 43.3
Lsat_1_v5_gn_4_119500 Lactuca sativa HOM05D001555 ORTHO05D001616 4.3e-06 55.5 77 39.0
Zm00001eb059220 Zea mays HOM05D001555 ORTHO05D001616 4.3e-06 55.5 69 43.5
BcaC07g41254 Brassica carinata HOM05D001555 ORTHO05D001616 5.6e-06 55.1 80 40.0
A09p59340 Brassica napus HOM05D001555 ORTHO05D001616 5.6e-06 55.1 80 40.0
C08p42600 Brassica napus HOM05D001555 ORTHO05D001616 5.6e-06 55.1 80 40.0
BolC8t51821H Brassica oleracea HOM05D001555 ORTHO05D001616 5.6e-06 55.1 80 40.0
BraA09t41316Z Brassica rapa HOM05D001555 ORTHO05D001616 5.6e-06 55.1 80 40.0
Lsat_1_v5_gn_1_17701 Lactuca sativa HOM05D001555 ORTHO05D001616 5.6e-06 55.1 68 42.6
arahy.Tifrunner.gnm1.ann1.S6U7JB Arachis hypogaea HOM05D001555 ORTHO05D001616 7.3e-06 54.7 84 45.2
arahy.Tifrunner.gnm1.ann1.UMAR0Y Arachis hypogaea HOM05D001555 ORTHO05D001616 7.3e-06 54.7 84 45.2
PGR083G2626 Punica granatum HOM05D001555 ORTHO05D001616 7.3e-06 54.7 73 43.8
Thecc.08G026300 Theobroma cacao HOM05D001555 ORTHO05D001616 7.3e-06 54.7 78 46.2
TWI36G0036 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 7.3e-06 54.7 84 40.5
HPP92_001872 Vanilla planifolia HOM05D001555 ORTHO05D001616 9.6e-06 54.3 83 38.6


User provided reference genes

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