Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 8.3e-96 353.6 167 100.0
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.2e-82 307.8 167 86.2
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.2e-80 302.4 167 82.6
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 6.4e-80 300.8 167 82.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.2e-79 297.0 167 80.8
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 2.7e-78 295.4 167 79.0
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 2.7e-78 295.4 167 79.0
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 6.6e-77 290.8 165 78.2
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 76.0
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 2.5e-76 288.9 167 77.8
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 3.3e-76 288.5 167 74.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 4.3e-76 288.1 167 74.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 77.8
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 5.6e-76 287.7 167 76.0
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 78.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.6e-75 285.0 167 74.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 4.7e-75 284.6 167 76.0
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 8.1e-75 283.9 167 74.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.4e-74 283.1 167 74.9
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.4e-74 283.1 167 74.3
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.8e-74 282.7 165 76.4
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.8e-74 282.7 167 74.3
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 76.0
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 74.9
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 74.9
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 4.4e-73 278.1 165 77.0
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 9.9e-73 276.9 166 74.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 75.4
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 73.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 73.7
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 2.4e-71 272.3 167 71.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 74.9
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 73.7
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 74.3
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 74.3
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 74.3
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 73.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 5.4e-71 271.2 166 73.5
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 5.4e-71 271.2 167 72.5
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 9.3e-71 270.4 167 72.5
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.1e-70 269.2 164 75.6
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 70.1
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 71.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.3e-69 266.5 174 70.7
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 71.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 71.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 3.0e-69 265.4 164 74.4
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 3.9e-69 265.0 167 73.7
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 3.9e-69 265.0 167 74.3
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 3.9e-69 265.0 167 71.3
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 8.7e-69 263.8 168 72.0
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 8.7e-69 263.8 168 72.0
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 2.5e-68 262.3 168 71.4
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 68.9
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 68.9
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 4.3e-68 261.5 168 71.4
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 5.6e-68 261.2 168 71.4
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 7.3e-68 260.8 167 70.1
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 70.8
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 71.4
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 71.4
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 9.6e-68 260.4 167 70.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 2.1e-67 259.2 168 71.4
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.8
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 3.6e-67 258.5 167 68.9
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.8e-67 258.1 167 71.9
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 4.8e-67 258.1 166 69.3
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 8.1e-67 257.3 168 70.8
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 3.1e-66 255.4 168 70.2
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 4.0e-66 255.0 168 69.6
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 4.0e-66 255.0 167 67.7
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 5.3e-66 254.6 164 67.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 6.9e-66 254.2 167 70.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 69.5
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 9.0e-66 253.8 166 66.9
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.2e-65 253.4 159 69.8
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.6e-65 252.3 178 67.4
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.6e-65 252.3 166 68.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 70.8
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 3.4e-65 251.9 167 67.1
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 5.8e-65 251.1 167 67.1
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.6e-65 250.8 166 67.5
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 9.9e-65 250.4 166 67.5
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 65.3
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.7e-64 249.6 167 65.9
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.2e-64 249.2 167 70.1
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.2e-64 249.2 167 70.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 6.4e-64 247.7 167 68.9
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 66.5
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 9.3e-63 243.8 164 68.9
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.6e-62 243.0 179 63.7
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.8e-61 239.6 189 60.8
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.8e-61 239.6 189 60.3
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 8.7e-61 237.3 167 65.3
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.1e-60 236.9 168 67.9
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.5e-60 236.5 167 62.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.9e-60 236.1 219 52.1
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.6e-59 233.0 203 54.7
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.8e-59 232.3 167 65.9
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.8e-58 229.6 189 57.7
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 3.1e-58 228.8 164 64.0
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 9.0e-58 227.3 137 73.7
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.8e-56 221.9 167 58.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.9e-55 219.5 166 59.6
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.7e-54 215.7 126 74.6
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 6.7e-53 211.1 135 71.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-52 210.3 175 57.1
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.1e-52 210.3 166 59.0
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 6.2e-51 204.5 131 70.2
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.4e-50 203.4 127 70.1
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.8e-50 203.0 166 56.6
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 5.8e-49 198.0 176 51.1
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.1e-47 193.7 165 53.3
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.2e-46 190.3 167 50.9
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.2e-46 190.3 167 56.3
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.7e-46 189.1 128 65.6
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 7.9e-46 187.6 164 53.7
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.5e-44 183.3 117 69.2
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 2.5e-44 182.6 164 52.4
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.6e-43 179.9 167 50.9
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 6.9e-42 174.5 130 67.7
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 3.4e-41 172.2 178 50.0
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-40 170.6 167 50.3
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.9e-40 169.1 133 57.9
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.9e-39 166.4 167 50.9
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.2e-38 163.7 165 49.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.6e-38 162.2 163 49.7
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.4e-37 160.2 118 62.7
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-37 159.5 139 52.5
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 5.1e-37 158.3 97 69.1
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 5.1e-37 158.3 97 69.1
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 8.8e-37 157.5 150 51.3
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 5.7e-36 154.8 98 69.4
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 5.7e-36 154.8 163 47.2
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.1e-31 140.6 114 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.4e-31 140.2 127 49.6
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 9.4e-31 137.5 97 63.9
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.6e-28 129.4 150 47.3
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 2.8e-27 125.9 183 43.2
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.2e-25 120.6 164 38.4
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.2e-25 120.6 164 39.0
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.6e-25 119.4 126 43.7
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.1e-23 114.0 80 62.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 7.2e-23 111.3 88 56.8
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 9.7e-20 100.9 101 51.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.7e-14 82.0 64 57.8
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.7e-14 82.0 64 57.8
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-14 81.3 66 56.1
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-13 80.9 57 63.2
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 1.8e-13 80.1 169 29.6
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-12 76.6 57 61.4
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.7e-12 75.1 64 54.7
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-11 73.9 64 53.1
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.3e-11 73.9 61 49.2
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.8e-10 70.1 127 33.9
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 5.3e-10 68.6 134 32.1
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.3e-10 68.6 117 29.1
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.6e-09 67.0 44 70.5
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 7.7e-09 64.7 40 77.5
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 5.0e-08 62.0 39 74.4
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 5.0e-08 62.0 71 47.9
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 5.0e-08 62.0 41 61.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 4.2e-07 58.9 83 33.7
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 2.1e-06 56.6 111 28.8


User provided reference genes

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