Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 6.1e-202 707.2 344 100.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 6.8e-169 597.4 338 84.9
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 4.6e-165 584.7 344 82.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.4e-158 563.1 345 80.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.3e-156 556.6 351 77.5
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.4e-153 546.6 352 76.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.4e-153 546.6 352 76.1
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.4e-153 546.6 345 78.0
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 3.8e-151 538.5 353 75.4
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 5.4e-150 534.6 346 75.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.6e-149 533.1 345 75.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.6e-149 533.1 362 74.0
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.1e-149 532.7 354 73.4
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.1e-148 528.1 353 74.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.5e-147 526.6 346 74.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.5e-147 525.8 346 74.0
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.6e-146 523.1 345 75.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.8e-146 522.3 343 73.8
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-145 520.4 350 73.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.4e-145 520.0 360 71.7
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.8e-145 519.6 344 75.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 4.0e-145 518.5 347 74.1
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 6.9e-145 517.7 350 73.1
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.0e-144 516.2 374 70.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 5.8e-144 514.6 359 71.0
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 5.8e-144 514.6 344 72.4
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 7.6e-144 514.2 343 73.8
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 9.9e-144 513.8 344 74.4
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.9e-143 512.3 350 73.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 4.9e-143 511.5 354 72.6
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 8.4e-143 510.8 348 72.1
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.9e-142 509.6 410 63.4
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.2e-142 508.4 360 70.8
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 4.2e-142 508.4 346 72.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 5.4e-142 508.1 344 74.1
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.4e-142 508.1 337 74.2
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.6e-141 506.5 374 68.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.7e-141 505.8 340 73.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.7e-141 505.8 354 71.2
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 7.9e-141 504.2 343 72.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.0e-140 503.8 343 72.3
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.0e-140 503.8 368 69.6
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.7e-140 503.1 340 74.1
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.7e-140 503.1 344 71.2
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.3e-140 502.7 348 71.3
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.0e-140 502.3 378 68.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.9e-140 501.9 364 67.6
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 6.6e-140 501.1 344 73.5
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 6.6e-140 501.1 367 69.2
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.5e-139 500.0 344 73.0
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.3e-139 498.8 361 70.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.3e-139 498.4 367 69.8
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-138 496.9 355 69.9
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.3e-138 496.9 375 69.1
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.1e-138 496.1 354 68.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.8e-138 495.7 344 73.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.8e-138 495.7 354 68.9
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.8e-138 495.7 358 69.3
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.6e-138 495.4 350 70.0
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.2e-138 494.6 355 69.0
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 6.2e-138 494.6 364 66.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 6.2e-138 494.6 356 67.4
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.8e-137 493.0 376 66.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 3.1e-137 492.3 343 70.8
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-136 490.3 358 68.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.0e-136 489.6 359 68.5
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.0e-136 489.6 372 68.0
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.0e-136 489.6 364 69.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.4e-136 488.8 346 70.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.4e-136 488.8 363 68.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 7.6e-136 487.6 356 69.4
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 7.6e-136 487.6 355 70.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.9e-136 487.3 354 68.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-135 486.9 353 68.6
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.8e-135 485.3 361 65.7
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.4e-135 484.6 359 69.1
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 8.4e-135 484.2 347 69.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.4e-134 483.4 342 68.4
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.4e-134 483.4 365 64.9
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 7.1e-134 481.1 357 68.6
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.5e-133 478.8 515 52.4
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.0e-133 478.0 346 68.8
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.0e-132 477.2 344 70.9
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.8e-132 476.5 354 68.4
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 8.7e-132 474.2 346 68.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.6e-130 469.9 355 66.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.8e-130 469.2 344 67.4
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.7e-130 468.8 329 72.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-129 466.8 351 67.5
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.8e-129 466.5 343 70.3
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 2.4e-129 466.1 355 66.5
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.1e-129 465.7 361 64.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.2e-128 463.8 355 66.2
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 2.0e-128 463.0 355 67.3
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.6e-128 462.6 330 69.4
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 3.4e-128 462.2 350 67.7
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 5.8e-128 461.5 355 66.8
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 5.8e-128 461.5 353 66.6
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 5.8e-128 461.5 353 66.6
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-127 459.9 355 67.0
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 3.8e-127 458.8 367 64.0
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 6.5e-127 458.0 355 66.8
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.4e-127 457.6 349 67.3
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.1e-126 457.2 357 65.5
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.5e-126 454.9 358 64.8
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.1e-125 453.0 344 68.3
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 7.9e-125 451.1 355 64.2
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 8.7e-124 447.6 347 66.6
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.5e-123 446.8 347 66.6
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.6e-122 443.4 347 65.7
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 6.2e-122 441.4 343 64.4
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-121 440.3 341 65.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.8e-121 439.9 373 60.9
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-120 437.2 368 59.0
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.6e-120 436.0 344 64.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.5e-120 435.3 370 63.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.0e-119 434.1 376 57.4
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-119 433.7 342 65.5
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 5.0e-119 431.8 353 63.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 8.4e-119 431.0 344 64.5
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 7.2e-118 427.9 334 64.7
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.3e-116 422.9 308 68.8
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.3e-116 422.9 426 55.4
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.3e-116 422.9 354 60.5
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 8.2e-114 414.5 361 60.7
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.4e-113 413.7 328 67.4
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.1e-113 412.1 408 55.4
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.3e-113 411.8 308 68.2
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.0e-112 409.8 329 65.3
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 3.2e-110 402.5 364 56.9
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 6.5e-103 378.3 366 55.2
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.9e-102 376.7 324 58.3
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.5e-94 349.7 352 54.8
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-91 340.9 338 53.8
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.3e-84 316.6 240 65.0
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 8.8e-84 314.7 375 46.7
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.8e-82 309.7 365 47.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 6.8e-76 288.5 164 79.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.7e-71 273.9 381 43.3
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.9e-71 273.1 298 52.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 5.6e-70 268.9 237 55.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.2e-69 267.7 361 44.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.0e-68 264.6 398 39.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 2.4e-65 253.4 250 57.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 2.4e-65 253.4 250 57.6
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 3.5e-64 249.6 341 43.1
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-62 242.7 215 64.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 7.3e-62 241.9 173 72.3
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.0e-60 238.0 213 60.6
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 3.5e-56 223.0 185 63.8
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 6.0e-56 222.2 237 55.7
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 7.3e-46 188.7 128 67.2
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.6e-45 187.6 138 71.7
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.5e-38 164.5 88 83.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.5e-35 154.5 360 31.9
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-33 148.3 122 59.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.6e-32 142.9 341 34.9
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.1e-28 130.2 76 73.7
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 5.3e-12 76.3 80 53.8
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.5e-11 74.7 65 58.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.6e-08 64.7 33 75.8


User provided reference genes

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