Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 2.2e-120 435.6 220 100.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.2e-88 329.3 220 77.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.3e-85 320.1 220 75.9
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.5e-84 316.6 220 75.0
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.1e-66 255.4 227 63.4
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.1e-61 238.4 225 58.7
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.1e-61 238.4 225 61.8
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.0e-60 236.5 225 59.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.0e-60 236.5 219 58.4
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.0e-60 236.5 219 62.1
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 9.7e-60 234.2 215 60.0
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.7e-59 233.4 207 61.8
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.7e-59 232.3 219 63.5
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.8e-59 231.9 214 62.6
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 8.2e-59 231.1 223 61.4
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.8e-58 229.9 228 61.0
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.1e-58 229.2 224 58.0
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 4.1e-58 228.8 224 59.8
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 4.1e-58 228.8 223 61.0
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 5.3e-58 228.4 174 70.1
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 6.9e-58 228.0 229 58.5
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 2.0e-57 226.5 221 58.8
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.0e-57 226.5 225 59.6
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.0e-57 226.5 239 58.2
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.0e-56 224.2 172 69.8
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.0e-56 224.2 214 58.9
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.3e-56 223.8 220 59.5
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.9e-56 222.6 231 57.6
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 6.5e-56 221.5 226 56.6
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.9e-55 219.9 222 59.9
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.5e-55 219.5 223 57.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.2e-55 219.2 175 65.1
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 5.5e-55 218.4 174 67.8
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-54 216.9 174 66.7
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-54 216.9 174 66.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 2.1e-54 216.5 224 55.8
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.1e-54 216.5 174 66.1
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 2.1e-54 216.5 229 57.2
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 3.6e-54 215.7 221 56.1
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 3.6e-54 215.7 222 58.6
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 7.9e-54 214.5 223 54.3
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.3e-53 213.0 227 56.8
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 3.0e-53 212.6 171 66.7
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.9e-53 212.2 225 58.7
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 8.8e-53 211.1 220 57.3
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.1e-52 210.7 221 53.8
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-52 210.7 175 65.7
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.1e-52 210.7 175 65.7
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.1e-52 210.7 217 56.7
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.5e-52 210.3 199 58.3
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.3e-52 209.1 190 63.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.4e-52 208.8 175 65.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 4.4e-52 208.8 190 62.1
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.7e-52 208.4 226 57.1
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.3e-51 207.2 153 70.6
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.7e-51 206.8 215 56.3
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.7e-51 206.8 214 57.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 2.2e-51 206.5 173 63.6
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 2.8e-51 206.1 228 56.1
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.7e-51 205.7 162 70.4
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 3.7e-51 205.7 156 70.5
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 6.3e-51 204.9 147 75.5
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 8.2e-51 204.5 182 65.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.4e-50 203.8 226 54.9
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.8e-50 203.4 217 55.8
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.8e-50 203.4 225 52.4
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 3.1e-50 202.6 194 60.3
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.1e-50 202.2 189 60.3
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 5.3e-50 201.8 183 62.3
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 9.1e-50 201.1 163 66.9
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 2.6e-49 199.5 173 64.2
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.5e-49 199.1 225 52.0
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.5e-49 199.1 174 64.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 3.5e-49 199.1 172 65.1
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.5e-49 198.7 178 59.6
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 5.9e-49 198.4 227 55.1
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.9e-49 198.4 172 64.0
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 7.7e-49 198.0 169 65.1
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.0e-48 195.3 216 52.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 6.5e-48 194.9 189 58.7
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 6.5e-48 194.9 216 54.2
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 8.5e-48 194.5 278 46.8
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.9e-47 193.4 157 68.2
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-46 190.7 195 57.4
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.6e-46 190.3 154 68.2
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 3.6e-46 189.1 193 59.1
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 4.7e-46 188.7 195 56.4
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 4.7e-46 188.7 147 67.3
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 6.1e-46 188.3 256 45.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 8.0e-46 188.0 194 58.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.0e-45 187.6 193 58.5
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.4e-45 187.2 166 63.3
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.8e-45 186.8 227 53.7
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.8e-45 186.8 153 65.4
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.3e-45 186.4 166 62.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 4.0e-45 185.7 230 51.3
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 8.8e-45 184.5 226 50.9
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.5e-44 183.7 161 60.9
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 1.5e-44 183.7 183 57.9
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 1.5e-44 183.7 150 65.3
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.3e-44 182.6 172 60.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 5.7e-44 181.8 155 62.6
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 9.7e-44 181.0 183 56.8
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 9.7e-44 181.0 142 67.6
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.3e-43 180.6 181 56.9
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.7e-43 180.3 182 57.1
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.7e-43 180.3 182 57.1
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 2.2e-43 179.9 183 56.8
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 2.2e-43 179.9 186 61.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 5.3e-42 175.3 148 63.5
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.5e-39 166.4 195 49.7
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 4.2e-39 165.6 189 51.9
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.0e-37 161.0 190 53.2
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.8e-37 160.2 147 62.6
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 5.2e-37 158.7 179 52.5
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.7e-35 153.7 113 73.5
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 3.7e-35 152.5 114 74.6
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.1e-34 151.0 173 53.8
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 2.4e-34 149.8 139 59.0
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.7e-33 146.4 126 65.1
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 2.2e-32 143.3 174 48.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.9e-31 140.2 153 54.9
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 3.2e-31 139.4 148 58.1
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 3.6e-30 136.0 97 75.3
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.5e-28 130.6 169 48.5
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 2.6e-28 129.8 172 45.3
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 9.8e-28 127.9 154 54.5
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 2.0e-25 120.2 196 41.8
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.0e-25 120.2 150 50.0
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 4.5e-25 119.0 187 41.2
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.3e-24 116.7 86 67.4
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.9e-24 116.3 102 63.7
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 4.7e-22 109.0 171 40.4
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 4.0e-21 105.9 88 67.0
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.0e-20 103.6 202 41.6
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 7.5e-20 101.7 148 46.6
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.7e-19 100.5 80 71.2
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 2.2e-19 100.1 117 51.3
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.2e-17 94.4 150 44.0
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 4.3e-15 85.9 131 44.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 4.3e-15 85.9 143 40.6
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 5.6e-15 85.5 109 50.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 1.2e-12 77.8 89 47.2
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 7.5e-12 75.1 51 72.5
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-11 72.8 72 55.6
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.4e-10 68.9 121 39.7
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 2.0e-09 67.0 86 53.5
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 4.6e-09 65.9 133 37.6
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.3e-08 64.3 165 33.3
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.6e-06 56.2 38 63.2
PRCOL_00004960 Prasinoderma coloniale HOM05D005311 ORTHO05D006160 3.6e-06 56.2 163 35.6
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 4.7e-06 55.8 71 46.5


User provided reference genes

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