Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 4.2e-187 657.9 339 100.0
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 3.6e-138 495.4 340 77.4
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.8e-134 483.0 340 75.9
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 4.7e-130 468.4 341 74.5
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 2.1e-122 443.0 341 70.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.4e-120 435.6 341 68.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 3.7e-119 432.2 341 68.3
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.2e-118 429.1 344 71.2
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 2.1e-117 426.4 343 67.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 4.6e-117 425.2 342 67.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 6.0e-117 424.9 342 67.0
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.3e-116 422.9 346 67.1
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 5.0e-116 421.8 347 66.6
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.9e-115 419.9 343 65.9
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 4.3e-115 418.7 341 67.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 8.9e-113 411.0 343 65.6
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.5e-112 410.2 343 65.0
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.2e-111 406.4 349 63.3
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 6.4e-111 404.8 332 63.0
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 5.4e-110 401.7 332 66.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.6e-109 400.2 344 64.2
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 4.6e-109 398.7 341 65.1
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 4.6e-109 398.7 331 65.6
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 3.0e-108 396.0 344 64.0
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.3e-107 392.1 342 62.3
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 7.3e-107 391.3 347 63.1
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.5e-107 391.0 332 64.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.6e-106 390.2 342 62.9
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.6e-106 390.2 343 62.7
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.6e-106 389.0 346 61.6
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.4e-105 387.1 345 61.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.8e-105 386.7 344 64.0
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.2e-105 385.2 332 63.3
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.2e-104 384.0 345 61.2
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.5e-104 383.6 345 60.9
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.4e-104 382.5 335 62.1
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.4e-104 382.5 343 61.8
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 9.9e-104 380.9 357 63.3
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 9.9e-104 380.9 344 61.6
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.3e-103 380.6 356 61.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.2e-103 379.8 338 63.3
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 3.8e-103 379.0 343 61.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 4.9e-103 378.6 344 60.8
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 6.4e-103 378.3 344 62.5
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 8.4e-103 377.9 343 61.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 8.4e-103 377.9 345 61.7
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 8.4e-103 377.9 343 61.5
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.4e-102 377.1 344 62.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.4e-102 376.3 342 61.4
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 7.8e-101 371.3 341 62.8
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.1e-100 368.6 332 61.7
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 6.6e-100 368.2 347 62.0
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 6.6e-100 368.2 345 61.7
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.9e-99 366.7 332 62.3
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 4.3e-99 365.5 296 67.2
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.3e-99 365.5 332 62.0
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 4.3e-99 365.5 342 62.3
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 5.6e-99 365.2 346 60.7
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 7.3e-99 364.8 344 60.8
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 9.6e-99 364.4 343 61.5
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 9.6e-99 364.4 345 61.2
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.6e-98 362.5 346 60.4
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 8.1e-98 361.3 344 59.0
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 5.3e-97 358.6 344 59.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.0e-97 357.8 332 61.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 3.4e-96 355.9 397 54.4
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.8e-96 355.1 332 60.8
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 5.8e-96 355.1 345 58.3
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.6e-96 354.8 343 58.9
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.9e-96 354.4 345 59.4
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.3e-95 354.0 332 60.8
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.3e-95 354.0 408 52.0
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 3.8e-95 352.4 341 61.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 6.4e-95 351.7 349 59.0
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 8.4e-95 351.3 332 59.9
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.1e-94 350.9 349 60.7
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.4e-94 350.5 344 58.4
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 7.1e-94 348.2 346 58.1
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 9.3e-94 347.8 346 60.1
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.2e-93 347.4 413 51.1
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 6.0e-93 345.1 349 58.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.0e-92 344.4 390 53.8
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.0e-92 344.4 344 59.3
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.0e-92 344.4 346 59.8
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.5e-91 340.5 343 55.7
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.5e-91 340.5 348 58.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 7.3e-91 338.2 348 57.2
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 7.3e-91 338.2 337 59.1
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 9.6e-91 337.8 335 60.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 9.6e-91 337.8 350 58.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.1e-89 332.8 350 57.4
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 6.9e-89 331.6 342 55.8
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.0e-88 330.1 329 59.0
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.0e-88 330.1 345 55.1
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.4e-88 329.3 346 57.2
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.6e-88 328.2 327 59.3
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.7e-87 327.0 332 57.2
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.7e-87 327.0 348 55.2
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.8e-87 325.9 334 54.8
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.9e-87 325.5 346 56.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.9e-87 325.5 340 57.6
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.4e-86 323.2 335 57.9
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.2e-85 320.9 348 52.3
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.2e-85 320.9 321 58.6
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.7e-85 319.7 329 57.1
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.8e-84 317.0 348 52.6
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.3e-84 316.6 335 56.7
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.0e-84 316.2 332 57.5
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.1e-84 315.5 324 58.0
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 6.7e-84 315.1 342 53.2
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 8.7e-84 314.7 348 55.7
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 8.7e-84 314.7 266 62.4
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.5e-83 313.9 334 56.6
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.9e-83 313.5 260 67.3
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 9.6e-83 311.2 347 53.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 6.2e-82 308.5 331 55.9
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.8e-81 307.0 344 56.1
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.4e-80 302.8 325 56.9
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 3.4e-80 302.8 279 64.2
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 4.5e-80 302.4 344 52.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.3e-79 300.8 325 56.6
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.9e-79 299.7 248 66.9
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 4.9e-79 298.9 324 54.9
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 4.9e-79 298.9 325 56.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 4.9e-79 298.9 324 54.9
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 8.4e-79 298.1 325 56.0
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.1e-78 297.7 328 55.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.9e-78 297.0 280 62.1
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 4.2e-78 295.8 324 55.2
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 4.2e-78 295.8 344 51.2
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 9.3e-78 294.7 327 55.0
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-77 292.7 323 55.1
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 3.5e-77 292.7 323 55.1
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 6.0e-77 292.0 328 55.5
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.0e-76 289.7 340 54.7
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 3.9e-76 289.3 342 52.9
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 6.7e-76 288.5 332 53.6
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-75 287.0 323 54.5
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.9e-75 287.0 323 54.5
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 3.3e-75 286.2 323 54.2
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 3.3e-75 286.2 344 49.7
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 7.4e-75 285.0 344 50.9
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.7e-71 273.9 253 60.1
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.0e-60 236.5 206 65.5
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.1e-54 218.0 344 43.9
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 9.7e-51 204.9 347 40.3
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.0e-36 158.3 322 38.2
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 3.7e-34 149.8 392 34.4
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 5.9e-32 142.5 153 56.2
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 8.5e-31 138.7 243 38.7
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-26 124.4 156 50.6
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 7.2e-22 109.0 102 58.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.5e-19 101.3 230 33.5
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 1.8e-17 94.4 152 44.7
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.3e-14 83.2 163 37.4
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 8.3e-10 68.9 342 25.7
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 5.4e-09 66.2 189 32.8
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 9.2e-09 65.5 188 31.9
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 1.9e-06 57.8 370 26.5


User provided reference genes

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