Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.8e-274 947.2 467 100.0
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.0e-203 712.6 463 75.8
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 5.0e-191 671.4 466 72.3
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.5e-190 669.1 523 65.2
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.3e-174 615.1 497 63.6
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 4.2e-169 598.6 479 61.6
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.3e-165 587.0 465 62.2
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.8e-165 585.9 465 61.9
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 6.2e-165 584.7 465 61.3
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 3.1e-164 582.4 467 61.7
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.0e-164 582.0 473 61.5
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.8e-163 578.2 465 61.9
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.8e-156 556.6 467 60.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 4.5e-155 552.0 464 60.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 5.4e-153 545.0 467 59.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 3.5e-152 542.3 468 58.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.0e-151 539.3 468 56.8
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 6.7e-151 538.1 464 58.0
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 4.3e-150 535.4 467 57.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.3e-149 533.9 464 57.1
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 4.8e-149 531.9 468 57.5
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.7e-146 523.5 469 55.9
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.7e-146 523.5 470 56.8
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.8e-146 522.3 468 57.7
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 3.8e-146 522.3 482 55.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 3.8e-146 522.3 466 56.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.9e-145 520.0 465 55.7
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.9e-145 520.0 472 57.2
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 5.5e-145 518.5 465 55.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 7.1e-145 518.1 470 56.6
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.2e-144 517.3 473 56.2
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.6e-144 516.9 473 56.4
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.6e-144 515.4 471 56.3
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 4.6e-144 515.4 469 55.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 6.0e-144 515.0 468 56.0
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.0e-143 514.2 467 55.5
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.1e-142 510.8 474 55.5
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 5.7e-142 508.4 467 56.1
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.6e-141 506.9 475 57.1
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.7e-141 505.8 467 55.5
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 5.3e-140 501.9 483 55.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.0e-139 500.0 471 55.6
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 6.5e-138 495.0 464 55.2
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.1e-137 494.2 470 53.4
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.5e-137 491.9 473 54.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.2e-136 490.7 472 53.6
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 3.5e-136 489.2 472 52.5
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.6e-136 488.8 470 52.8
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.1e-136 488.4 469 54.8
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 6.1e-136 488.4 469 52.2
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.0e-135 487.6 465 54.6
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.0e-135 486.1 465 54.4
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.1e-135 485.3 466 54.1
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 6.7e-135 485.0 466 52.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.7e-135 485.0 488 52.7
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.9e-134 483.4 472 53.0
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 9.7e-134 481.1 471 53.9
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.8e-133 479.6 472 52.8
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 3.7e-133 479.2 481 50.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.3e-132 475.3 463 52.7
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 4.5e-131 472.2 521 47.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 5.9e-131 471.9 469 53.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 7.7e-131 471.5 473 51.2
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.7e-130 470.3 468 52.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 8.5e-130 468.0 477 50.9
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.4e-129 467.2 468 53.0
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.9e-129 466.8 468 51.1
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.9e-129 466.8 468 53.2
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.5e-129 466.5 473 53.1
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 4.2e-129 465.7 468 53.4
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 9.4e-129 464.5 468 53.0
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 2.1e-128 463.4 464 51.9
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.7e-128 463.0 467 50.1
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.7e-128 463.0 471 50.5
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.7e-128 463.0 463 52.9
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.7e-128 463.0 468 53.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 4.6e-128 462.2 467 50.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.6e-128 462.2 469 51.0
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 7.9e-128 461.5 465 52.5
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-127 460.3 470 51.7
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.3e-127 459.9 467 51.4
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.5e-126 457.2 468 51.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.0e-126 456.8 463 51.0
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.0e-126 456.8 398 58.8
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 5.7e-126 455.3 467 51.2
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 9.7e-126 454.5 463 50.1
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.7e-125 453.8 465 52.5
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 2.2e-125 453.4 467 50.3
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.8e-125 452.2 465 52.0
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 8.2e-125 451.4 473 52.2
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.1e-124 451.1 468 51.3
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.4e-124 450.7 467 50.7
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.0e-123 446.8 464 49.8
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 3.4e-123 446.0 477 50.5
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.9e-121 440.3 475 49.1
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 3.2e-121 439.5 467 48.8
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.7e-120 436.4 464 49.1
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 5.1e-119 432.2 463 49.7
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 5.1e-119 432.2 463 48.4
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 7.4e-118 428.3 467 48.0
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.3e-117 427.6 492 47.2
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 4.8e-117 425.6 434 52.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.4e-116 423.3 432 52.3
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 5.9e-115 418.7 472 47.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.7e-114 417.2 541 45.1
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 6.5e-114 415.2 473 45.5
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.1e-113 414.5 468 47.2
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.4e-111 407.5 460 46.7
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.3e-110 402.9 460 45.7
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.8e-109 399.1 442 50.5
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 6.3e-109 398.7 474 44.1
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.4e-108 396.7 477 45.9
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.2e-107 394.4 444 44.8
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.5e-105 386.7 463 45.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.2e-105 386.3 394 52.3
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 7.2e-105 385.2 468 45.9
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.0e-102 377.1 439 46.7
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 8.3e-101 371.7 378 53.4
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.2e-99 367.9 504 40.5
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.0e-96 355.1 499 40.1
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.0e-95 353.2 502 39.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.6e-94 350.1 468 40.6
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.5e-94 348.6 501 39.7
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.5e-94 348.6 501 39.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.9e-93 345.9 503 40.0
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.5e-86 324.3 319 53.3
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 2.9e-85 320.1 476 39.5
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 8.3e-85 318.5 320 51.6
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 2.0e-75 287.3 359 42.6
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 4.6e-75 286.2 391 44.2
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 2.3e-71 273.9 477 33.1
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-62 244.6 565 32.4
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.6e-62 243.8 163 66.9
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.9e-61 240.4 562 30.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.4e-60 238.0 373 38.3
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.1e-59 234.2 164 63.4
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 6.8e-55 219.2 616 27.1
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 4.4e-46 189.9 310 41.0
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 7.9e-43 179.1 192 43.8
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.9e-42 176.8 111 73.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.8e-39 167.9 257 40.9
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.2e-36 157.1 280 38.6
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 6.9e-31 139.4 118 50.0
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 5.1e-26 123.2 78 75.6
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.7e-26 122.9 90 64.4
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 6.9e-23 112.8 173 33.5
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 5.0e-21 106.7 181 32.6
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 4.6e-19 100.1 78 61.5
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.9e-19 99.4 103 53.4
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.0e-18 97.4 86 60.5
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.4e-17 92.8 79 59.5
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.6e-14 84.3 102 41.2
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 4.5e-14 83.6 68 50.0
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.7e-13 81.6 54 74.1


User provided reference genes

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