Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 4.8e-106 387.9 203 100.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 4.4e-83 311.6 203 77.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 2.0e-80 302.8 203 76.4
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.4e-73 279.3 203 72.4
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.7e-71 273.1 197 71.6
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.0e-71 272.3 232 66.4
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 4.3e-70 268.5 179 73.7
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.2e-69 266.9 188 70.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.6e-69 266.5 196 68.4
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.8e-69 265.8 189 69.8
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.6e-69 265.4 188 69.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 4.0e-68 261.9 179 70.9
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.0e-67 259.6 189 70.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.6e-67 259.2 190 68.4
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.6e-67 257.7 170 75.3
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 7.6e-67 257.7 183 69.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 7.6e-67 257.7 176 72.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.9e-67 257.3 170 73.5
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.3e-66 256.9 172 74.4
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.3e-66 256.9 162 79.0
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.3e-66 256.9 162 79.0
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.2e-66 256.1 194 66.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.9e-66 255.8 179 69.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.9e-66 255.8 190 66.3
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.7e-66 255.4 187 69.0
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 6.4e-66 254.6 171 74.3
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.4e-66 254.2 171 74.9
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.4e-66 254.2 186 67.7
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.1e-65 253.8 171 73.7
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.1e-65 253.8 199 66.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.9e-65 253.1 197 64.5
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 3.2e-65 252.3 196 67.9
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.2e-65 252.3 179 70.4
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 5.4e-65 251.5 174 72.4
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 7.1e-65 251.1 197 65.5
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 7.1e-65 251.1 181 69.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 7.1e-65 251.1 167 72.5
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 9.2e-65 250.8 187 66.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.2e-64 250.4 170 70.6
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.6e-64 250.0 191 67.0
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.6e-64 250.0 186 67.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.7e-64 249.2 193 65.3
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 4.6e-64 248.4 178 69.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.6e-64 248.4 181 70.2
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 6.0e-64 248.1 172 69.8
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.0e-64 248.1 185 68.1
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 7.8e-64 247.7 182 66.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.8e-64 247.7 193 66.8
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.7e-63 246.5 169 71.0
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.3e-63 246.1 179 70.9
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 2.3e-63 246.1 198 65.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.9e-63 245.4 175 67.4
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.1e-63 245.0 181 65.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.1e-63 245.0 175 71.4
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 6.6e-63 244.6 198 65.7
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.1e-62 243.8 169 71.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.5e-62 242.7 178 70.8
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 3.3e-62 242.3 173 71.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.3e-62 242.3 174 66.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 5.6e-62 241.5 192 64.1
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.3e-62 241.1 179 68.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 7.3e-62 241.1 186 63.4
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 7.3e-62 241.1 178 70.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.6e-62 240.7 164 73.2
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.2e-61 240.4 186 65.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 1.2e-61 240.4 199 59.3
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.6e-61 240.0 188 63.3
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.1e-61 239.6 168 67.9
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.6e-61 238.8 188 63.8
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 6.2e-61 238.0 196 60.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 8.1e-61 237.7 192 64.6
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 8.1e-61 237.7 192 64.6
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.1e-61 237.7 198 58.6
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.1e-60 237.3 168 67.9
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.4e-60 236.9 195 64.1
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.4e-60 236.9 178 69.1
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.8e-60 236.5 174 64.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.8e-60 236.5 171 64.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.8e-60 236.5 180 64.4
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.4e-60 236.1 197 59.4
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.1e-60 235.7 172 65.7
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.2e-60 235.0 197 63.5
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 6.8e-60 234.6 183 65.6
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.8e-60 234.6 205 60.5
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.9e-60 234.2 185 62.2
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.2e-59 233.8 201 61.2
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.2e-59 233.8 201 61.2
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.5e-59 233.4 185 62.7
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.5e-59 233.4 150 75.3
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.6e-59 232.6 190 64.2
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.6e-59 232.6 190 64.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.4e-59 232.3 181 64.6
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 7.6e-59 231.1 176 65.9
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 7.6e-59 231.1 169 70.4
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.6e-59 231.1 175 64.6
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.3e-58 230.3 175 65.1
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.7e-58 229.9 179 66.5
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 3.8e-58 228.8 179 65.9
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.4e-58 228.0 185 64.9
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 8.4e-58 227.6 175 64.0
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.4e-57 226.1 174 62.6
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 3.2e-57 225.7 179 62.0
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.2e-57 225.7 178 63.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 4.2e-57 225.3 178 64.0
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 5.4e-57 224.9 198 56.6
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 5.4e-57 224.9 170 64.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.1e-57 224.6 169 68.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 9.3e-57 224.2 173 65.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.6e-56 223.4 159 71.7
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 4.6e-56 221.9 172 65.7
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.0e-55 220.7 184 58.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.7e-55 219.9 168 65.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.7e-55 219.9 172 63.4
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 6.6e-55 218.0 170 63.5
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.7e-55 217.6 215 54.4
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.1e-54 217.2 194 59.8
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.1e-52 210.7 197 56.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.4e-52 210.3 207 53.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.2e-51 207.2 202 55.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.8e-50 202.2 142 66.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.4e-49 198.4 183 61.7
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.1e-48 196.4 166 62.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.0e-48 194.9 174 59.8
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-46 190.7 164 57.3
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.3e-46 188.0 163 55.8
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.4e-44 183.0 199 52.3
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.5e-43 180.3 138 65.2
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.5e-43 180.3 165 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.9e-41 173.3 194 49.5
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-35 152.9 190 46.3
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 4.9e-34 148.7 103 70.9
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.9e-34 148.7 98 74.5
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.2e-33 146.0 186 43.0
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.2e-33 146.0 125 59.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.6e-32 143.7 93 74.2
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.1e-32 143.3 99 71.7
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.7e-32 142.9 186 45.7
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.3e-31 140.6 85 75.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.7e-31 138.3 89 73.0
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.3e-30 136.0 100 68.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.7e-29 132.5 100 63.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.8e-29 132.1 139 51.1
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.5e-27 127.1 83 72.3
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.9e-26 122.9 83 69.9
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 7.4e-22 108.2 85 64.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-21 107.5 140 47.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 9.4e-17 91.3 72 61.1
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.9e-16 88.2 82 54.9
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 7.4e-14 81.6 135 34.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.8e-13 79.7 76 55.3
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 6.9e-12 75.1 55 65.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 6.1e-08 62.0 47 66.0
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.8e-07 60.5 67 50.7
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.3e-07 60.1 96 38.5
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.0e-07 59.7 41 68.3
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 6.7e-07 58.5 49 57.1
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 5.7e-06 55.5 60 48.3


User provided reference genes

Program Settings