Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 8.9e-221 770.0 398 100.0
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 4.1e-149 531.9 418 69.1
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 4.7e-145 518.5 398 68.3
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 2.1e-137 493.0 332 72.6
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 6.7e-136 488.0 380 67.1
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 3.5e-132 475.7 351 68.4
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 8.8e-128 461.1 399 60.7
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 1.2e-127 460.7 405 60.5
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 4.4e-127 458.8 420 59.0
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 1.7e-126 456.8 420 58.3
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 8.3e-126 454.5 326 69.3
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 1.8e-125 453.4 388 61.3
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 4.1e-125 452.2 320 69.7
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 9.1e-125 451.1 326 68.1
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 1.2e-124 450.7 326 69.9
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 2.2e-123 446.4 317 70.0
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 3.8e-123 445.7 381 61.4
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 8.5e-123 444.5 360 64.2
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 2.5e-122 443.0 372 62.6
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 9.4e-122 441.0 394 59.4
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 3.6e-121 439.1 395 58.7
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 8.0e-121 438.0 378 60.3
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 1.4e-120 437.2 395 58.7
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 3.0e-120 436.0 327 67.0
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 4.0e-120 435.6 354 63.3
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 4.0e-120 435.6 395 60.0
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 8.8e-120 434.5 312 67.9
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 1.5e-119 433.7 327 66.7
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 5.7e-119 431.8 362 63.8
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 1.3e-118 430.6 388 58.8
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 2.8e-118 429.5 308 67.5
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 8.3e-118 427.9 324 66.4
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 8.3e-118 427.9 404 54.0
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 1.8e-117 426.8 329 66.0
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 2.4e-117 426.4 318 66.7
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 9.1e-117 424.5 394 57.1
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 9.1e-117 424.5 394 56.3
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 1.2e-116 424.1 393 57.8
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 1.2e-116 424.1 393 57.5
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 1.6e-116 423.7 402 57.0
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 2.7e-116 422.9 393 57.5
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 3.5e-116 422.5 344 61.9
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 4.5e-116 422.2 411 56.9
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 4.5e-116 422.2 385 59.2
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 1.0e-115 421.0 417 55.2
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 1.0e-115 421.0 326 64.7
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 2.3e-115 419.9 393 55.7
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 2.9e-115 419.5 322 64.6
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 3.8e-115 419.1 334 63.8
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 6.6e-115 418.3 320 65.9
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 4.2e-114 415.6 402 57.2
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 1.2e-113 414.1 404 54.5
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 1.6e-113 413.7 393 56.2
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 4.7e-113 412.1 416 54.8
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 4.7e-113 412.1 391 55.5
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 4.7e-113 412.1 393 56.0
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 8.0e-113 411.4 356 61.0
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 8.0e-113 411.4 365 58.9
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 8.0e-113 411.4 305 66.9
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 1.0e-112 411.0 394 56.6
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 3.0e-112 409.5 315 66.7
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 5.2e-112 408.7 323 62.8
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 3.4e-111 406.0 389 55.8
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 5.7e-111 405.2 421 53.0
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 8.3e-110 401.4 331 63.7
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 1.4e-109 400.6 387 56.1
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 3.2e-109 399.4 309 66.7
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 3.2e-109 399.4 315 64.1
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 4.1e-109 399.1 394 56.6
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 5.4e-109 398.7 388 55.2
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 5.4e-109 398.7 404 54.5
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.0e-107 394.4 338 61.5
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 8.6e-107 391.3 354 58.8
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 2.5e-106 389.8 387 54.8
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 2.5e-106 389.8 314 61.8
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 1.6e-105 387.1 318 62.9
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 6.1e-105 385.2 388 54.1
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 8.0e-105 384.8 352 57.4
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 1.5e-103 380.6 304 64.5
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 1.5e-103 380.6 356 55.9
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 2.0e-103 380.2 388 53.6
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 2.0e-103 380.2 305 63.6
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.3e-102 377.5 389 55.8
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 2.2e-102 376.7 280 67.9
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 3.7e-102 375.9 314 61.5
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 1.4e-101 374.0 340 60.3
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 1.6e-100 370.5 366 54.4
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 3.5e-100 369.4 324 58.6
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 5.0e-99 365.5 324 59.0
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 8.6e-99 364.8 301 62.8
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.5e-98 364.0 280 65.0
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 7.3e-98 361.7 465 45.8
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 3.5e-92 342.8 307 58.0
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.5e-90 337.4 320 56.9
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 1.6e-89 334.0 305 54.8
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 4.0e-88 329.3 282 61.3
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 7.6e-87 325.1 281 59.4
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 1.3e-86 324.3 334 51.5
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 7.1e-85 318.5 245 65.7
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 4.6e-84 315.8 324 53.4
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 5.4e-77 292.4 306 52.3
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 3.1e-72 276.6 228 64.0
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 9.0e-72 275.0 330 47.3
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 9.9e-71 271.6 230 63.9
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 2.2e-70 270.4 380 43.4
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 3.2e-69 266.5 196 66.8
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 7.1e-69 265.4 228 60.1
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.5e-66 257.7 306 45.8
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 9.9e-63 245.0 281 50.5
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 2.1e-60 237.3 301 46.5
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 8.7e-59 231.9 276 47.5
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.5e-50 203.8 349 39.8
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 1.6e-49 201.1 173 59.5
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 3.4e-47 193.4 277 44.4
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 9.7e-42 175.3 139 61.9
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 8.8e-27 125.6 105 60.0
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 1.3e-25 121.7 98 64.3
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 1.3e-25 121.7 98 64.3
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.1e-24 118.6 96 61.5
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.1e-21 108.6 97 61.9
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 1.1e-21 108.6 97 61.9
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 9.4e-21 105.5 97 59.8
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 4.4e-18 96.7 90 52.2
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.3e-14 85.1 94 52.1
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 5.7e-10 69.7 82 51.2
Eucgr.G00935 Eucalyptus grandis HOM05D006342 ORTHO05D008155 6.3e-09 66.2 115 34.8
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 1.8e-08 64.7 51 54.9


User provided reference genes

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