Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 5.4e-220 768.1 638 100.0
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 4.1e-103 379.8 644 72.2
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.9e-100 370.9 640 71.2
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.1e-98 365.2 623 71.9
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.8e-98 364.4 623 72.1
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.5e-97 361.3 643 70.9
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 3.8e-96 356.7 624 72.0
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 3.8e-96 356.7 624 72.0
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.7e-94 350.5 636 71.4
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.7e-94 350.5 636 71.4
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 1.7e-93 347.8 642 71.8
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 3.6e-91 340.1 623 71.9
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.4e-90 337.4 645 70.2
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.0e-89 334.3 623 70.6
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 1.3e-88 331.6 645 69.5
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.4e-88 329.3 615 69.9
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 8.4e-88 328.9 641 69.0
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 8.4e-88 328.9 623 70.3
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.4e-87 328.2 623 70.5
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 9.3e-87 325.5 623 70.1
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 3.9e-85 320.1 638 67.9
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.9e-85 320.1 638 69.3
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 8.7e-85 318.9 641 68.5
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.1e-84 318.5 637 68.0
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.8e-83 313.9 645 67.9
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 8.1e-83 312.4 637 68.8
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.1e-82 312.0 626 67.7
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.8e-82 311.2 641 67.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.5e-81 308.1 643 67.8
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 4.5e-81 306.6 645 67.4
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 4.5e-81 306.6 651 67.3
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 2.2e-80 304.3 634 68.5
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 8.4e-80 302.4 634 67.0
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.1e-79 302.0 638 68.0
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.9e-79 301.2 639 67.4
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.9e-79 301.2 645 67.3
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 3.2e-79 300.4 642 67.4
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 7.1e-79 299.3 640 67.5
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 7.1e-79 299.3 640 67.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.2e-78 298.5 641 68.2
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.6e-78 298.1 641 68.2
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 6.0e-78 296.2 652 67.2
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.3e-77 295.0 639 67.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.3e-77 295.0 640 67.7
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 1.8e-77 294.7 642 66.5
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.1e-77 293.1 642 66.8
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 6.7e-77 292.7 634 66.6
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.1e-75 287.7 634 67.0
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.1e-75 287.7 635 67.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.7e-75 287.0 643 66.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 6.2e-75 286.2 644 65.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 8.1e-75 285.8 639 66.8
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.1e-74 283.9 634 66.9
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 3.1e-74 283.9 636 66.0
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 4.0e-74 283.5 643 66.1
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.2e-73 282.0 635 64.9
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.6e-73 280.8 629 67.6
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.3e-72 278.5 637 66.1
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.9e-72 277.3 644 65.4
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 8.4e-72 275.8 644 65.1
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 8.4e-72 275.8 645 63.9
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.1e-71 275.4 639 66.0
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 3.2e-71 273.9 639 65.9
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.7e-70 270.8 634 65.6
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 2.7e-70 270.8 647 64.9
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 4.6e-70 270.0 631 64.7
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 4.6e-70 270.0 637 65.5
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 7.9e-70 269.2 635 65.2
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.3e-69 268.5 650 64.5
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.3e-69 267.7 589 69.9
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.0e-69 267.3 634 65.6
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.9e-68 264.6 639 65.7
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.3e-68 263.8 629 65.8
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 7.4e-68 262.7 634 64.4
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 7.4e-68 262.7 636 64.3
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.3e-67 261.9 638 64.6
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 8.2e-67 259.2 641 64.1
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 8.2e-67 259.2 639 65.1
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 3.1e-66 257.3 645 65.9
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.9e-64 250.0 624 66.0
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 7.9e-62 242.7 593 66.9
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 7.9e-62 242.7 642 63.4
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.1e-60 238.8 644 65.2
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 4.3e-60 236.9 251 52.2
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 2.8e-59 234.2 638 63.0
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 9.0e-58 229.2 627 64.1
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.6e-54 216.9 641 51.6
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.4e-53 215.3 644 61.5
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.8e-53 214.9 642 63.6
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 4.3e-52 210.3 648 61.0
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 4.3e-52 210.3 626 63.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 6.9e-50 203.0 638 61.9
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 5.9e-49 199.9 644 61.3
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.2e-48 198.0 642 58.3
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 5.0e-48 196.8 653 61.7
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.4e-47 192.6 627 62.0
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 4.7e-46 190.3 657 59.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 2.3e-45 188.0 649 58.7
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 2.3e-45 188.0 635 58.7
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 8.8e-45 186.0 242 45.9
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 4.4e-44 183.7 637 42.4
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 5.7e-44 183.3 638 61.1
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 8.2e-43 179.5 636 56.0
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 1.0e-40 172.6 655 58.5
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 8.5e-40 169.5 641 39.9
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.6e-38 165.2 233 70.0
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.3e-37 161.4 628 60.7
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 3.9e-37 160.6 451 78.3
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.3e-35 155.6 228 42.5
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.9e-32 144.4 257 42.4
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.1e-30 136.7 655 57.1
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.0e-29 136.0 637 57.8
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.8e-29 135.2 587 60.6
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 6.8e-29 133.3 649 57.3
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 6.8e-29 133.3 656 57.3
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-28 132.5 636 58.2
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.0e-28 131.7 642 57.3
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 3.4e-28 131.0 600 61.0
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 4.8e-27 127.1 196 40.3
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 4.1e-26 124.0 630 57.9
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.6e-25 122.1 633 57.8
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 1.6e-25 122.1 499 50.7
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 2.0e-25 121.7 632 57.9
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 5.9e-25 120.2 633 58.5
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-24 118.2 631 58.0
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 3.8e-24 117.5 648 56.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 8.5e-24 116.3 235 35.3
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.5e-23 115.5 616 57.6
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.5e-23 115.5 616 57.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 3.0e-21 107.8 235 35.3
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 4.0e-21 107.5 620 57.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 5.2e-21 107.1 508 52.0
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 5.2e-21 107.1 602 59.0
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 6.8e-21 106.7 621 55.2
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.5e-20 105.5 94 60.6
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.4e-20 104.4 216 36.1
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 4.4e-20 104.0 622 56.6
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-19 102.4 622 56.4
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 6.3e-19 100.1 246 32.5
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 7.7e-17 93.2 146 41.1
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 1.3e-16 92.4 247 32.4
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 3.8e-16 90.9 252 33.7
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.6e-16 89.7 607 58.8
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 2.5e-15 88.2 241 29.9
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.2e-15 87.4 82 59.8
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.2e-15 87.4 82 59.8
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 7.2e-15 86.7 215 34.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.2e-14 85.9 198 33.8
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.6e-14 84.3 87 56.3
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 4.7e-14 84.0 637 55.7
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.2e-12 79.3 230 33.5
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 3.4e-12 77.8 145 35.2
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 5.7e-12 77.0 197 31.0
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 1.3e-11 75.9 48 66.7
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.2e-11 75.1 652 53.8
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 6.3e-11 73.6 159 34.6
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-10 72.8 587 54.2
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.4e-10 72.4 134 41.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 2.4e-10 71.6 238 29.0
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.2e-10 71.2 105 43.8
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 5.4e-10 70.5 141 37.6
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 7.0e-10 70.1 141 37.6
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 2.7e-09 68.2 151 37.7
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.0e-08 66.2 247 29.1
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 5.0e-08 63.9 238 27.3
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 5.0e-08 63.9 238 27.3
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 1.5e-07 62.4 217 26.7
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 2.5e-07 61.6 75 54.7
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 9.5e-07 59.7 52 53.8
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 9.5e-07 59.7 191 31.4
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.2e-06 59.3 193 30.1
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 2.1e-06 58.5 52 53.8
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 2.1e-06 58.5 52 53.8
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.1e-06 58.5 218 27.1
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 2.8e-06 58.2 206 26.7
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 3.6e-06 57.8 112 37.5
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 4.7e-06 57.4 111 36.0
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 4.7e-06 57.4 138 35.5
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 4.7e-06 57.4 113 37.2
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 6.1e-06 57.0 179 30.2
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 8.0e-06 56.6 213 28.6


User provided reference genes

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