Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.7e-112 409.5 216 100.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 91.7
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 90.7
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 91.7
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.8e-103 379.4 214 91.6
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 90.3
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 90.7
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 90.7
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 90.3
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 90.3
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 90.3
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 90.3
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 90.7
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 89.4
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 89.4
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 89.8
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.4
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.9
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 90.3
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.9
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.9
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 88.9
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.4
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.9
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.9
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.4
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 87.5
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 87.5
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 88.0
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 89.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 87.5
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 88.4
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.0
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 87.5
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 87.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 87.0
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 88.9
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 88.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 88.0
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 2.7e-99 365.5 221 86.9
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 86.6
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 4.7e-99 364.8 215 88.4
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 87.5
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 86.1
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.6
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 87.0
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 85.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 86.1
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 87.0
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 85.6
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 85.6
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 86.1
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 88.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 85.6
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.2
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.2
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.6
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 87.5
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 85.2
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 85.2
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 85.2
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 86.6
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 84.7
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 84.7
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 84.7
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 84.7
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 84.7
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 86.6
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 86.6
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 86.1
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 84.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 84.7
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 85.2
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 2.6e-97 359.0 216 83.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.6e-97 359.0 215 85.1
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 3.3e-97 358.6 215 85.1
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 86.6
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 86.1
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 83.8
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 4.4e-97 358.2 216 83.3
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 4.4e-97 358.2 216 83.3
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 4.4e-97 358.2 220 85.9
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 83.3
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 7.5e-97 357.5 216 83.3
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 7.5e-97 357.5 216 83.3
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 7.5e-97 357.5 216 85.2
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-96 356.7 216 85.6
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.3e-96 356.7 215 85.1
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.7e-96 356.3 216 83.8
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 2.8e-96 355.5 216 86.1
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.7e-96 355.1 216 85.2
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.3e-96 354.4 216 85.2
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.8e-95 352.8 216 85.2
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 2.4e-95 352.4 216 83.8
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.4e-95 352.4 216 85.2
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 3.1e-95 352.1 216 83.3
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 5.3e-95 351.3 227 82.8
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 85.2
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 7.0e-95 350.9 216 84.7
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.2e-94 350.1 217 83.9
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.0e-93 347.1 216 84.7
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.9e-92 342.8 221 81.0
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 3.2e-92 342.0 216 79.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 4.2e-92 341.7 216 82.4
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.2e-92 341.7 216 85.6
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 3.6e-91 338.6 216 77.3
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.4e-90 336.7 216 83.3
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 4.0e-90 335.1 199 87.9
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.8e-88 328.9 221 79.2
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 3.7e-88 328.6 216 81.5
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 6.3e-88 327.8 218 78.4
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.8e-87 326.2 216 80.1
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 77.3
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.7e-86 322.4 216 76.9
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.5e-86 321.6 216 81.0
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.3e-85 320.1 216 79.2
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.3e-85 320.1 216 79.2
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 3.8e-85 318.5 216 77.8
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 2.5e-84 315.8 216 76.4
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 5.5e-84 314.7 215 78.6
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 7.2e-84 314.3 216 75.9
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 7.2e-84 314.3 216 72.2
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 2.3e-82 309.3 214 75.7
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.7e-80 302.0 165 90.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 4.9e-80 301.6 165 92.1
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 6.3e-80 301.2 216 75.9
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 9.2e-79 297.4 165 90.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.6e-78 296.6 216 75.0
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.7e-77 293.1 276 61.2
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.0e-74 282.0 216 72.7
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.5e-73 280.0 216 72.2
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.5e-73 280.0 216 72.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-73 280.0 216 69.4
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 2.0e-73 279.6 217 68.7
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 3.7e-72 275.4 217 69.6
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.8e-71 273.1 216 69.9
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.3e-69 266.9 219 69.9
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.2e-67 260.4 180 81.1
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 4.0e-66 255.4 165 79.4
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 3.4e-65 252.3 353 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 7.5e-65 251.1 144 80.6
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.9e-63 246.5 217 65.4
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 9.8e-57 224.2 219 56.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 7.8e-54 214.5 233 53.2
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.5e-49 200.3 264 51.9
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 2.1e-46 189.9 219 48.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-46 189.5 108 80.6
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.7e-46 189.5 108 80.6
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 4.3e-44 182.2 136 75.7
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 9.9e-41 171.0 135 73.3
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.2e-40 169.9 213 47.4
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 5.4e-39 165.2 114 79.8
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 3.0e-37 159.5 81 90.1
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.1e-37 158.7 84 83.3
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 2.5e-36 156.4 87 82.8
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 3.3e-36 156.0 106 73.6
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.0e-33 146.7 81 85.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 2.9e-32 142.9 101 80.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 2.9e-32 142.9 101 80.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 2.9e-32 142.9 101 80.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 2.9e-32 142.9 101 80.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 2.9e-32 142.9 101 80.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 9.0e-26 121.3 71 73.2
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.9e-20 103.6 63 90.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 9.6e-20 101.3 74 81.1
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.1e-18 96.3 68 82.4
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 9.0e-10 68.2 39 74.4
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 3.4e-09 66.2 39 71.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 1.3e-08 64.3 48 64.6
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 1.3e-08 64.3 48 64.6
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 1.3e-08 64.3 48 64.6
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 5.0e-08 62.4 48 62.5


User provided reference genes

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