Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 2.4e-281 971.5 468 100.0
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 5.0e-231 804.3 457 82.5
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 4.8e-218 761.1 456 79.4
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 3.0e-212 741.9 456 76.3
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 5.0e-207 724.5 467 71.9
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 8.6e-207 723.8 466 72.7
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 1.5e-206 723.0 460 72.8
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 2.5e-206 722.2 471 72.6
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 2.3e-204 715.7 462 72.3
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 2.9e-202 708.8 457 72.4
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 3.7e-202 708.4 457 72.4
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 3.7e-202 708.4 459 74.7
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 2.7e-200 702.2 464 70.5
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 3.5e-200 701.8 465 70.5
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 4.6e-200 701.4 460 72.2
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 7.8e-200 700.7 466 71.2
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 1.5e-198 696.4 457 71.8
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 1.9e-198 696.0 464 70.9
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 5.6e-198 694.5 463 70.2
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 7.3e-198 694.1 466 70.8
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 9.5e-198 693.7 461 71.6
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 2.1e-197 692.6 463 70.0
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 2.8e-197 692.2 470 70.2
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 3.6e-197 691.8 463 70.0
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 4.7e-197 691.4 464 69.8
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 4.7e-197 691.4 464 69.4
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 8.0e-197 690.6 467 70.7
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 1.2e-195 686.8 486 68.3
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 1.2e-195 686.8 466 70.0
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 2.6e-195 685.6 464 69.2
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 3.4e-195 685.3 457 70.2
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 4.4e-195 684.9 459 70.2
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 4.4e-195 684.9 429 74.4
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 2.2e-194 682.6 466 68.5
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 2.2e-194 682.6 467 69.0
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 3.7e-194 681.8 469 70.1
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 8.3e-194 680.6 475 68.4
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 1.1e-193 680.2 458 69.4
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 1.1e-193 680.2 459 69.5
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 5.4e-193 677.9 433 73.9
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 2.1e-192 676.0 459 69.9
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 2.1e-192 676.0 469 69.1
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 3.5e-192 675.2 469 68.9
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 8.6e-191 670.6 438 70.3
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 1.9e-190 669.5 464 69.2
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 5.6e-190 667.9 456 69.1
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 6.8e-188 661.0 430 72.1
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 8.3e-186 654.1 430 69.3
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 1.2e-184 650.2 464 68.5
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 3.5e-184 648.7 440 68.9
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 7.8e-184 647.5 456 66.0
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 1.3e-183 646.7 456 66.2
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 3.3e-182 642.1 457 66.3
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 2.8e-181 639.0 456 66.2
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 4.7e-181 638.3 439 68.8
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 6.2e-181 637.9 464 64.0
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 8.1e-181 637.5 466 65.9
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 3.1e-180 635.6 484 63.0
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 4.0e-180 635.2 466 64.8
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 1.2e-179 633.6 449 68.2
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 5.8e-179 631.3 464 64.0
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 5.8e-179 631.3 463 65.2
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 2.2e-178 629.4 429 68.3
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 6.4e-178 627.9 429 68.1
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 6.4e-178 627.9 429 68.1
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 8.4e-178 627.5 465 64.1
RcHm_v2.0_Chr7g0220181 Rosa chinensis HOM05D006686 ORTHO05D008463 1.1e-177 627.1 364 79.7
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 2.4e-177 625.9 425 68.7
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 4.2e-177 625.2 464 64.0
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 4.2e-177 625.2 447 66.2
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 3.5e-176 622.1 463 64.6
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 7.8e-176 620.9 435 67.4
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 1.3e-175 620.2 366 77.6
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 3.9e-175 618.6 435 67.4
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 1.5e-174 616.7 383 73.9
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 7.3e-174 614.4 430 68.6
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 4.0e-172 608.6 460 63.0
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 3.4e-171 605.5 427 66.5
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 6.4e-170 601.3 444 66.2
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 1.1e-169 600.5 466 62.4
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 5.1e-167 591.7 471 61.4
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 3.3e-166 589.0 383 71.8
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 1.6e-165 586.6 392 70.2
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 3.6e-165 585.5 385 69.4
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 6.2e-165 584.7 423 65.0
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 1.4e-164 583.6 393 69.7
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 9.9e-163 577.4 463 61.6
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 3.8e-162 575.5 481 60.7
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 1.6e-160 570.1 439 61.3
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 1.4e-156 557.0 464 58.0
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 3.2e-153 545.8 431 60.6
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 3.0e-151 539.3 429 61.5
CiPaw.06G176300 Carya illinoinensis HOM05D006686 ORTHO05D008463 1.9e-150 536.6 331 75.8
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 8.7e-143 511.1 429 59.2
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 1.1e-140 504.2 375 64.3
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 1.7e-130 470.3 464 53.7
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 3.2e-113 412.9 312 63.5
Cre09.g399626 Chlamydomonas reinhardtii HOM05D006686 ORTHO05D008463 9.8e-102 374.8 456 43.6
Haze_09995 Corylus avellana HOM05D006686 ORTHO05D008463 5.4e-100 369.0 212 81.6
Haze_27211 Corylus avellana HOM05D006686 ORTHO05D008463 5.4e-100 369.0 382 48.4
Glyma.17G001600 Glycine max HOM05D006686 ORTHO05D008463 5.7e-94 349.0 259 68.7
PRCOL_00000210 Prasinoderma coloniale HOM05D006686 ORTHO05D008463 2.9e-93 346.7 451 43.0
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 8.6e-90 335.1 220 72.3
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 5.8e-86 322.4 277 59.2
Oeu000154.1 Olea europaea HOM05D006686 ORTHO05D008463 9.5e-81 305.1 322 53.4
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 1.5e-70 271.2 259 51.0
CARHR293020 Cardamine hirsuta HOM05D006686 ORTHO05D008463 7.1e-68 262.3 159 74.2
Eucgr.A00755 Eucalyptus grandis HOM05D006686 ORTHO05D008463 3.6e-64 250.0 155 77.4
Nitab4.5_0004668g0030 Nicotiana tabacum HOM05D006686 ORTHO05D008463 5.5e-44 183.0 128 67.2
Haze_09994 Corylus avellana HOM05D006686 ORTHO05D008463 2.7e-43 180.6 255 41.2
CBR_g48698 Chara braunii HOM05D006686 ORTHO05D008463 1.0e-29 135.6 123 56.9
CiPaw.06G176500 Carya illinoinensis HOM05D006686 ORTHO05D008463 3.0e-26 124.0 134 49.3
Actinidia26190 Actinidia chinensis HOM05D006686 ORTHO05D008463 2.8e-24 117.5 70 72.9
Hund15396 Selenicereus undatus HOM05D006686 ORTHO05D008463 8.2e-24 115.9 73 74.0
MELO3C032221.2 Cucumis melo HOM05D006686 ORTHO05D008463 1.3e-21 108.6 80 67.5
Haze_05751 Corylus avellana HOM05D006686 ORTHO05D008463 9.4e-20 102.4 102 52.9
CBR_g48699 Chara braunii HOM05D006686 ORTHO05D008463 2.7e-19 100.9 79 50.6
Peaxi162Scf00011g01844 Petunia axillaris HOM05D006686 ORTHO05D008463 2.7e-19 100.9 130 47.7
RcHm_v2.0_Chr7g0220191 Rosa chinensis HOM05D006686 ORTHO05D008463 1.3e-08 65.5 106 38.7


User provided reference genes

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