Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 5.2e-168 594.3 308 100.0
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 5.4e-125 451.4 309 79.3
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.7e-124 449.1 312 78.2
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 2.4e-120 436.0 308 75.6
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 3.5e-116 422.2 310 74.5
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.0e-115 420.6 313 73.8
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.3e-115 419.5 311 73.0
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 8.7e-115 417.5 313 74.4
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.5e-114 416.8 309 74.1
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.5e-114 416.8 309 74.1
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 1.6e-113 413.3 310 72.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 1.5e-111 406.8 246 84.1
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 2.0e-111 406.4 302 72.8
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 2.6e-111 406.0 248 83.1
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 1.1e-109 400.6 308 71.1
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.2e-109 399.1 313 71.6
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 3.2e-109 399.1 259 80.7
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 4.2e-109 398.7 295 73.2
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 7.1e-109 397.9 232 86.2
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 1.2e-108 397.1 303 71.9
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.2e-108 397.1 243 83.5
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 2.1e-108 396.4 297 71.0
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 3.5e-108 395.6 279 73.8
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 4.6e-108 395.2 256 80.9
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 7.8e-108 394.4 300 71.3
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 3.0e-107 392.5 292 72.9
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.0e-107 392.5 243 83.1
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 5.1e-107 391.7 314 69.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 4.3e-106 388.7 230 84.8
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 5.6e-106 388.3 245 82.4
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 7.3e-106 387.9 245 80.0
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 7.3e-106 387.9 247 78.5
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 9.6e-106 387.5 287 71.8
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 2.1e-105 386.3 226 85.4
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 4.8e-105 385.2 240 81.2
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 4.8e-105 385.2 221 86.4
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 6.2e-105 384.8 238 83.6
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 8.1e-105 384.4 243 80.7
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 1.1e-104 384.0 226 85.0
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.1e-104 382.5 226 85.0
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 3.1e-104 382.5 306 68.6
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 4.0e-104 382.1 304 69.1
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 6.9e-104 381.3 244 79.5
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 6.9e-104 381.3 297 70.4
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 9.0e-104 380.9 256 77.0
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.2e-103 380.6 243 79.4
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.2e-103 380.6 226 83.2
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.5e-103 380.2 311 67.5
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 1.5e-103 380.2 243 79.8
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.6e-103 379.4 241 79.3
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 4.5e-103 378.6 314 68.8
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.5e-103 378.6 311 68.5
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 5.8e-103 378.3 296 70.9
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 5.8e-103 378.3 305 67.9
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 7.6e-103 377.9 285 70.2
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 7.6e-103 377.9 244 77.5
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 1.3e-102 377.1 287 69.3
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 1.7e-102 376.7 238 79.4
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 6.4e-102 374.8 243 78.6
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.1e-101 374.0 257 75.9
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 2.4e-101 372.9 243 78.6
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 2.4e-101 372.9 305 70.5
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 3.2e-101 372.5 226 83.6
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 4.2e-101 372.1 272 71.0
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 4.2e-101 372.1 241 78.8
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 5.4e-101 371.7 263 74.9
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 5.4e-101 371.7 240 78.8
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 7.1e-101 371.3 302 66.6
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 9.3e-101 370.9 243 78.2
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 1.2e-100 370.5 243 77.8
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.2e-100 370.5 243 77.4
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.1e-100 369.8 243 77.8
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 3.5e-100 369.0 226 82.3
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 3.5e-100 369.0 243 78.6
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 5.6e-98 361.7 266 72.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 7.4e-98 361.3 306 65.4
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 1.1e-96 357.5 227 78.4
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.4e-96 357.1 304 65.1
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 9.0e-96 354.4 204 86.3
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 1.5e-95 353.6 229 79.5
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.5e-95 353.6 256 70.3
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.6e-95 352.8 255 70.6
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 5.8e-95 351.7 214 82.7
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 7.6e-95 351.3 215 81.4
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 2.2e-94 349.7 366 57.7
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.9e-93 346.7 240 72.9
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 2.4e-93 346.3 205 83.9
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 7.1e-93 344.7 244 73.8
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 7.1e-93 344.7 237 73.0
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 6.0e-92 341.7 306 66.0
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 1.3e-91 340.5 268 67.2
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 7.4e-90 334.7 239 73.6
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.6e-89 333.6 238 72.3
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 4.8e-89 332.0 223 74.9
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 3.1e-88 329.3 385 53.8
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 9.0e-88 327.8 227 71.8
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 3.4e-87 325.9 299 63.2
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 3.8e-86 322.4 264 67.8
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 2.5e-85 319.7 193 83.4
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 3.5e-84 315.8 208 79.3
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 7.9e-84 314.7 295 64.7
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 6.9e-80 301.6 258 64.0
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 2.6e-79 299.7 205 74.6
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 1.4e-77 293.9 211 72.0
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 9.7e-74 281.2 244 63.1
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.4e-72 276.6 205 71.7
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 4.1e-72 275.8 253 59.7
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.9e-70 269.6 172 76.2
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 1.4e-69 267.3 224 59.4
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 8.2e-65 251.5 186 72.0
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 2.4e-64 250.0 159 81.8
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 2.9e-54 216.5 169 68.0
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 5.5e-53 212.2 182 58.8
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.4e-40 170.2 162 59.3
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 9.1e-40 168.3 161 58.4
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.7e-39 166.8 130 68.5
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.3e-38 163.7 168 57.1
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 2.3e-38 163.7 104 76.9
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 1.8e-27 127.5 313 36.1
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 9.8e-26 121.7 152 48.0
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 7.0e-24 115.5 257 38.9
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 6.0e-23 112.5 180 44.4
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 8.6e-22 108.6 144 49.3
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 2.5e-21 107.1 114 56.1
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 7.3e-21 105.5 66 74.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 4.0e-19 99.8 260 31.2
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 1.7e-17 94.4 56 75.0
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 6.4e-17 92.4 219 30.1
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 7.8e-15 85.5 62 66.1
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 3.0e-14 83.6 48 79.2
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.1e-11 75.1 104 51.0
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 3.7e-09 66.6 38 81.6
Medtr4g129075 Medicago truncatula HOM05D005661 ORTHO05D266434 6.6e-06 55.8 32 75.0


User provided reference genes

Program Settings