Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 0.0e+00 1084.7 528 100.0
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 3.2e-274 948.0 528 85.0
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.3e-264 915.2 528 80.9
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 6.6e-256 887.1 523 78.2
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 5.6e-255 884.0 524 78.1
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.6e-254 881.3 524 77.9
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 4.7e-254 880.9 523 77.4
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.9e-248 861.3 519 76.7
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 3.0e-240 835.1 513 76.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.1e-239 833.2 531 74.2
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.1e-239 833.2 513 76.2
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.8e-238 828.6 524 73.9
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 8.1e-238 827.0 519 74.8
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 8.1e-238 827.0 569 69.1
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 1.1e-237 826.6 513 75.4
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.4e-237 826.2 523 73.6
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.6e-236 822.0 518 73.0
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 3.4e-236 821.6 497 75.9
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 5.8e-236 820.8 524 73.3
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 9.9e-236 820.1 519 73.4
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 1.3e-235 819.7 518 72.8
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.7e-235 819.3 520 74.2
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 4.9e-235 817.8 524 73.3
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-234 816.2 514 74.7
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 5.4e-234 814.3 522 71.3
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 7.1e-234 813.9 522 75.9
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.2e-233 813.1 513 74.7
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.1e-233 812.4 515 74.0
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 6.0e-233 810.8 518 71.6
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.0e-232 810.1 519 73.2
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 3.0e-232 808.5 514 72.8
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 3.9e-232 808.1 522 71.3
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 5.1e-232 807.7 522 71.1
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.1e-231 806.6 518 71.4
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 7.4e-231 803.9 514 73.0
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 9.6e-231 803.5 536 71.6
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.3e-230 803.1 537 70.4
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 1.6e-230 802.7 522 71.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.8e-230 802.0 522 70.7
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 3.7e-230 801.6 518 71.0
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 8.1e-230 800.4 518 70.8
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.1e-229 798.5 520 71.2
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 4.0e-229 798.1 483 75.4
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.4e-228 795.0 522 71.1
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 3.4e-228 795.0 522 69.7
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 9.9e-228 793.5 522 69.3
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 3.8e-227 791.6 519 71.1
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 4.9e-227 791.2 513 71.2
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.9e-226 789.3 521 70.4
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 2.4e-226 788.9 517 70.0
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.2e-225 786.6 518 71.4
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 7.9e-225 783.9 518 67.8
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.0e-224 781.9 512 70.1
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 5.1e-224 781.2 514 71.4
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 8.7e-224 780.4 512 69.9
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.5e-223 779.6 514 71.6
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.3e-223 778.5 522 68.6
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 4.3e-223 778.1 488 72.5
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 5.6e-223 777.7 576 64.4
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 2.1e-222 775.8 515 71.7
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.1e-221 773.5 516 67.1
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.1e-221 773.5 514 69.8
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 1.4e-221 773.1 516 67.8
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 2.4e-221 772.3 516 67.2
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 7.6e-220 767.3 520 66.5
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 7.6e-220 767.3 519 70.7
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 4.2e-218 761.5 517 67.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.2e-217 760.0 517 67.3
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.2e-217 760.0 517 67.1
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.2e-217 760.0 517 67.1
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 2.1e-217 759.2 517 67.3
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.9e-215 752.7 517 66.5
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 2.4e-213 745.7 541 64.3
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.3e-213 744.6 526 66.0
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.0e-211 740.3 695 54.1
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 2.2e-211 739.2 510 69.8
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 3.8e-211 738.4 469 71.9
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 8.5e-211 737.3 542 63.5
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 9.4e-210 733.8 439 76.5
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.2e-209 733.4 521 69.7
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.3e-208 729.2 559 65.5
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.1e-207 726.9 519 64.7
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 5.9e-204 714.5 518 63.1
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.0e-203 713.8 519 63.8
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.2e-201 706.8 521 64.3
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.1e-199 700.3 503 68.0
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 2.9e-195 685.6 500 67.0
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 6.5e-195 684.5 529 58.8
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 8.5e-195 684.1 590 59.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.2e-194 681.8 519 64.4
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.3e-192 676.0 435 70.1
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 3.3e-191 672.2 397 77.6
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.7e-190 668.7 505 65.9
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 4.7e-185 651.7 391 77.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.1e-185 651.4 582 58.2
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 4.0e-176 622.1 338 86.1
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.8e-173 613.2 496 61.9
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 4.5e-172 608.6 420 66.4
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 5.7e-167 591.7 520 54.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.1e-165 587.4 539 52.9
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.5e-164 582.0 366 75.4
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.2e-159 567.4 354 76.8
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.2e-153 547.4 504 54.2
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.7e-150 537.0 308 80.2
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 8.6e-147 524.6 514 55.1
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.4e-143 512.7 358 67.9
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 4.4e-143 512.3 518 50.8
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 3.2e-141 506.1 283 82.0
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 2.9e-134 483.0 549 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.1e-131 472.2 442 51.6
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.1e-124 450.3 255 80.4
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.5e-124 449.5 342 63.2
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 8.7e-115 418.3 229 83.8
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 3.3e-114 416.4 287 68.6
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.8e-112 410.6 228 81.1
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.8e-112 410.6 228 81.1
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 4.9e-110 402.5 228 79.8
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 3.8e-86 323.2 527 38.5
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.3e-82 310.1 208 69.2
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-80 305.1 166 82.5
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.0e-80 302.4 210 68.6
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.1e-72 278.5 584 33.2
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.1e-72 278.5 539 35.3
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.2e-71 275.0 564 33.0
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.7e-70 271.2 169 75.1
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.7e-70 271.2 494 36.2
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 2.5e-69 267.3 240 55.4
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.1e-64 250.4 354 45.2
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 4.4e-58 229.9 195 55.9
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.7e-49 201.4 262 43.1
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 9.5e-45 185.7 164 57.3
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.3e-43 181.0 336 34.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 6.8e-35 152.9 85 74.1
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.2e-32 142.5 103 68.0
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 7.8e-31 139.4 106 66.0
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.3e-30 138.7 99 64.6
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 5.6e-29 133.3 83 78.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 7.3e-29 132.9 196 40.8
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 2.8e-28 131.0 109 61.5
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 8.3e-25 119.4 119 47.9
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.7e-23 114.4 85 67.1
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.9e-19 99.4 319 28.8
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.6e-12 78.6 98 42.9
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.1e-12 78.2 41 73.2
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 4.0e-11 73.9 51 64.7
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 2.4e-08 64.7 120 33.3
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 1.0e-06 59.3 79 34.2
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 1.3e-06 58.9 44 63.6
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.3e-06 58.2 80 41.2


User provided reference genes

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