Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 9.4e-56 219.9 109 100.0
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 8.2e-36 153.7 76 97.4
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 2.4e-35 152.1 82 87.8
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 2.4e-35 152.1 76 96.1
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 1.6e-34 149.4 82 87.8
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 3.5e-34 148.3 82 87.8
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 4.5e-34 147.9 80 85.0
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 5.9e-34 147.5 80 86.2
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 1.0e-33 146.7 82 84.1
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 5.0e-33 144.4 82 81.7
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 8.5e-33 143.7 82 82.9
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 8.5e-33 143.7 82 81.7
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 8.5e-33 143.7 80 85.0
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 1.5e-32 142.9 81 80.2
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 1.5e-32 142.9 82 79.3
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.9e-32 142.5 91 70.3
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.9e-32 142.5 91 70.3
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.9e-32 142.5 91 70.3
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 1.9e-32 142.5 80 82.5
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 2.5e-32 142.1 82 80.5
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 3.2e-32 141.7 82 80.5
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 3.2e-32 141.7 82 80.5
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 3.2e-32 141.7 82 78.0
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 3.2e-32 141.7 82 81.7
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 4.2e-32 141.4 80 83.8
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 4.2e-32 141.4 82 81.7
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 4.2e-32 141.4 82 80.5
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 4.2e-32 141.4 81 84.0
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 4.2e-32 141.4 82 80.5
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 4.2e-32 141.4 82 79.3
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 5.5e-32 141.0 82 79.3
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 5.5e-32 141.0 82 80.5
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 7.2e-32 140.6 82 80.5
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 9.4e-32 140.2 76 88.2
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 9.4e-32 140.2 82 80.5
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 1.2e-31 139.8 82 79.3
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 1.6e-31 139.4 82 79.3
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 1.6e-31 139.4 80 78.8
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.6e-31 139.4 82 79.3
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 1.6e-31 139.4 82 79.3
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 1.6e-31 139.4 82 76.8
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 1.6e-31 139.4 82 76.8
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 2.1e-31 139.0 82 79.3
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 2.1e-31 139.0 82 79.3
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 2.1e-31 139.0 82 79.3
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 2.1e-31 139.0 80 82.5
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 2.7e-31 138.7 82 78.0
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 2.7e-31 138.7 76 85.5
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 2.7e-31 138.7 82 78.0
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 2.7e-31 138.7 76 86.8
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 4.7e-31 137.9 82 76.8
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 6.1e-31 137.5 82 75.6
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 6.1e-31 137.5 82 79.3
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 6.1e-31 137.5 82 79.3
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 6.1e-31 137.5 82 79.3
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 6.1e-31 137.5 82 79.3
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 6.1e-31 137.5 82 79.3
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 6.1e-31 137.5 80 80.0
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 8.0e-31 137.1 77 81.8
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 8.0e-31 137.1 77 84.4
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 1.0e-30 136.7 77 83.1
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 1.0e-30 136.7 82 78.0
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 1.0e-30 136.7 82 75.6
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 1.0e-30 136.7 76 82.9
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.4e-30 136.3 80 77.5
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 1.4e-30 136.3 82 75.6
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 1.8e-30 136.0 80 77.5
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 1.8e-30 136.0 82 78.0
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 2.3e-30 135.6 76 82.9
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 2.3e-30 135.6 82 76.8
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 2.3e-30 135.6 82 78.0
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 2.3e-30 135.6 82 75.6
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 2.3e-30 135.6 80 78.8
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 2.3e-30 135.6 78 78.2
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 3.0e-30 135.2 82 75.6
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 3.0e-30 135.2 82 75.6
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 3.0e-30 135.2 76 81.6
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 3.0e-30 135.2 80 76.2
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 3.0e-30 135.2 84 77.4
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 4.0e-30 134.8 76 82.9
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 4.0e-30 134.8 80 77.5
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 4.0e-30 134.8 80 77.5
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 4.0e-30 134.8 82 75.6
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 4.0e-30 134.8 82 75.6
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 6.8e-30 134.0 76 81.6
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 8.8e-30 133.7 76 81.6
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 8.8e-30 133.7 75 84.0
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.2e-29 133.3 76 80.3
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 1.5e-29 132.9 76 80.3
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 1.5e-29 132.9 76 80.3
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 1.5e-29 132.9 82 73.2
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 2.0e-29 132.5 76 80.3
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 5.7e-29 131.0 76 78.9
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 5.7e-29 131.0 82 73.2
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 5.7e-29 131.0 76 78.9
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 5.7e-29 131.0 82 74.4
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 1.7e-28 129.4 76 78.9
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 1.7e-28 129.4 82 72.0
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 2.2e-28 129.0 77 77.9
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 2.8e-28 128.6 75 80.0
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 2.8e-28 128.6 76 77.6
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 3.7e-28 128.3 75 80.0
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 3.7e-28 128.3 82 73.2
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 1.1e-27 126.7 82 70.7
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 1.4e-27 126.3 75 77.3
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 4.1e-27 124.8 77 74.0
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 4.1e-27 124.8 76 73.7
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 5.4e-27 124.4 75 76.0
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 5.4e-27 124.4 76 75.0
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 9.1e-27 123.6 76 75.0
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 9.1e-27 123.6 76 73.7
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 9.1e-27 123.6 75 74.7
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 1.6e-26 122.9 76 75.0
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 2.0e-26 122.5 75 73.3
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 4.5e-26 121.3 82 73.2
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 7.7e-26 120.6 79 70.9
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 7.7e-26 120.6 80 65.0
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 8.6e-25 117.1 76 71.1
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 1.7e-20 102.8 80 53.8
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 2.2e-20 102.4 75 62.7
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 5.4e-19 97.8 75 58.7
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 5.4e-19 97.8 80 56.2
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 1.2e-18 96.7 76 57.9
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 6.6e-17 90.9 49 81.6
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 8.6e-17 90.5 75 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 3.6e-15 85.1 71 53.5
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 4.0e-14 81.6 54 68.5
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 1.7e-12 76.3 74 47.3
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 6.4e-12 74.3 75 46.7
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 9.2e-11 70.5 69 55.1
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.1e-08 63.5 40 70.0
Aa31LG9G8470 Aethionema arabicum HOM05D005477 ORTHO05D006721 2.1e-07 59.3 38 71.1
Nitab4.5_0000217g0090 Nicotiana tabacum HOM05D005477 ORTHO05D006721 2.1e-07 59.3 40 70.0


User provided reference genes

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