Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 2.7e-258 894.8 446 100.0
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 7.2e-187 657.5 438 73.1
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 9.4e-187 657.1 444 72.5
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 4.8e-183 644.8 447 70.7
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.6e-181 639.8 444 71.6
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 2.6e-181 639.0 447 71.1
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.7e-180 636.3 445 71.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 8.5e-180 634.0 446 72.2
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 8.5e-180 634.0 445 71.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.5e-179 631.3 445 71.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 2.7e-178 629.0 446 70.6
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 4.7e-178 628.2 445 70.6
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.0e-177 625.5 444 70.0
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.0e-176 622.9 451 70.7
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 5.7e-176 621.3 448 70.1
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.7e-175 619.8 445 69.4
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.8e-174 616.3 448 68.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.0e-172 610.5 444 68.7
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.9e-172 609.0 446 67.9
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 6.5e-172 607.8 448 68.1
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 2.5e-171 605.9 447 68.9
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.2e-171 605.5 440 70.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.4e-169 600.1 446 67.7
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.4e-169 600.1 447 68.0
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 3.0e-169 599.0 449 67.3
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 8.8e-169 597.4 444 67.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.5e-168 596.7 449 65.5
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.4e-168 595.1 451 66.3
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.7e-167 593.2 447 65.5
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.2e-167 592.8 449 66.6
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.7e-167 592.0 445 66.7
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 4.8e-167 591.7 447 65.1
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 8.3e-167 590.9 443 67.0
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 7.0e-166 587.8 444 65.5
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 9.1e-166 587.4 439 66.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.2e-165 587.0 449 65.9
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 3.5e-165 585.5 439 66.3
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 4.5e-165 585.1 448 64.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 4.5e-165 585.1 452 65.3
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 7.7e-165 584.3 435 66.4
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 3.8e-164 582.0 444 65.5
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.9e-163 579.7 444 64.9
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.3e-163 578.9 432 65.0
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 4.7e-162 575.1 438 65.5
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 8.0e-162 574.3 448 64.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.4e-161 573.5 448 64.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 4.0e-161 572.0 435 64.4
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 4.0e-161 572.0 439 64.5
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 4.0e-161 572.0 451 64.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.6e-160 569.3 442 63.8
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.4e-160 568.5 446 65.5
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.8e-160 567.4 446 64.1
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.3e-159 567.0 433 64.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.2e-159 566.2 451 62.5
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.9e-159 565.1 446 63.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.1e-158 563.9 434 64.3
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.4e-158 563.5 433 64.9
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.4e-158 561.6 434 62.9
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.2e-157 560.5 450 62.4
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.2e-157 560.5 430 64.4
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.7e-157 559.3 451 62.1
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 3.5e-157 558.9 433 63.5
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 5.9e-157 558.1 416 68.8
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 3.8e-156 555.4 441 63.7
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 8.6e-156 554.3 435 63.7
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 4.3e-155 552.0 409 66.3
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 5.6e-155 551.6 436 63.8
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.8e-154 549.3 446 61.9
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 6.1e-154 548.1 431 62.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.0e-153 547.4 428 62.1
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 4.0e-153 545.4 436 62.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 5.2e-153 545.0 437 62.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.4e-152 542.0 444 61.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.4e-152 542.0 444 61.0
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 4.9e-151 538.5 448 62.7
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 6.4e-151 538.1 414 64.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 2.4e-150 536.2 423 65.2
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.2e-150 535.8 346 75.7
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 5.4e-150 535.0 429 63.2
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.6e-149 533.5 378 69.3
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.0e-148 530.8 451 59.4
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.7e-148 530.0 432 63.4
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.9e-147 526.6 432 61.3
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.5e-147 526.2 463 59.2
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 4.3e-147 525.4 431 61.3
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 5.6e-147 525.0 448 61.2
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 7.3e-147 524.6 375 68.3
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 5.2e-145 518.5 456 59.6
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 6.8e-145 518.1 439 60.1
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.0e-144 516.5 436 61.5
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.0e-144 516.5 436 61.5
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 3.7e-143 512.3 347 71.8
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 4.9e-143 511.9 448 61.4
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 6.4e-143 511.5 447 62.0
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 6.4e-143 511.5 447 61.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 4.1e-142 508.8 447 60.0
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 7.0e-142 508.1 442 59.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.6e-141 506.9 447 60.4
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.7e-141 506.1 446 61.7
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 6.0e-141 505.0 388 62.9
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 7.8e-141 504.6 452 58.8
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.3e-140 503.8 448 60.7
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.3e-140 503.1 446 60.5
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 5.1e-140 501.9 448 61.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 5.1e-140 501.9 436 62.4
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.9e-139 500.0 442 62.7
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 4.3e-139 498.8 451 58.8
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.6e-138 495.7 447 60.6
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 6.2e-138 495.0 442 59.0
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 6.8e-137 491.5 448 60.0
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 3.4e-136 489.2 447 60.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 3.4e-136 489.2 447 60.2
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 4.9e-135 485.3 422 57.6
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-134 483.8 351 65.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-134 483.0 451 56.5
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.1e-134 482.3 451 56.5
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 7.1e-134 481.5 379 62.3
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 7.8e-133 478.0 351 67.2
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.0e-132 477.6 368 67.1
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.3e-132 476.5 411 57.9
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 3.9e-132 475.7 381 61.4
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 3.6e-130 469.2 381 61.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.9e-127 458.8 445 56.9
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 7.1e-126 454.9 356 65.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 4.4e-120 435.6 319 67.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.5e-115 419.9 341 61.6
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 3.9e-108 396.0 362 59.1
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 9.0e-105 384.8 317 60.6
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 9.0e-105 384.8 317 60.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.6e-101 374.0 383 54.0
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.8e-89 334.0 384 48.2
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.3e-84 317.0 434 44.5
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-80 304.7 232 64.2
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.9e-70 270.8 190 69.5
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.9e-64 249.2 166 72.9
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.7e-61 239.6 247 52.6
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 6.1e-61 239.2 378 42.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.5e-59 234.6 147 76.2
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 2.3e-52 210.7 261 47.5
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.3e-42 178.3 109 77.1
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 5.2e-36 156.4 150 52.0
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 8.6e-31 139.0 139 56.8
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.4e-28 131.7 110 66.4
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.5e-27 128.3 111 64.0
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.3e-23 115.2 98 54.1
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 3.8e-10 70.5 51 56.9
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 4.6e-08 63.5 57 54.4


User provided reference genes

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