Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 6.7e-73 277.3 148 100.0
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.8e-33 146.4 153 62.7
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 5.8e-32 141.4 127 66.9
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 3.7e-31 138.7 146 57.5
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 6.4e-31 137.9 141 63.1
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 5.4e-30 134.8 142 54.9
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 6.4e-23 111.3 130 51.5
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 2.7e-21 105.9 135 50.4
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 4.6e-21 105.1 133 55.6
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 1.3e-15 87.0 136 39.7
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 2.2e-15 86.3 133 43.6
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 2.2e-15 86.3 141 40.4
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 2.9e-15 85.9 136 39.7
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 4.9e-15 85.1 135 43.0
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 4.9e-15 85.1 138 41.3
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 4.1e-14 82.0 133 39.1
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 7.1e-14 81.3 137 41.6
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 1.6e-13 80.1 126 43.7
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.7e-13 79.3 124 41.9
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 4.6e-13 78.6 136 41.2
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 7.8e-13 77.8 117 42.7
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 3.0e-12 75.9 116 45.7
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 3.9e-12 75.5 116 44.8
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 6.6e-12 74.7 123 42.3
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 6.6e-12 74.7 128 38.3
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 6.6e-12 74.7 113 44.2
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 8.6e-12 74.3 138 42.8
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.1e-11 73.9 130 42.3
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.5e-11 73.6 136 39.7
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.9e-11 73.2 136 37.5
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.9e-11 73.2 136 39.7
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 2.5e-11 72.8 130 40.8
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 2.5e-11 72.8 143 37.8
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 2.5e-11 72.8 107 45.8
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 2.5e-11 72.8 134 41.0
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 4.3e-11 72.0 124 37.9
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 5.6e-11 71.6 103 45.6
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 7.3e-11 71.2 136 38.2
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.6e-10 70.1 119 42.0
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 1.6e-10 70.1 140 40.7
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 2.1e-10 69.7 124 37.1
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 2.1e-10 69.7 110 43.6
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 2.8e-10 69.3 130 37.7
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 4.7e-10 68.6 135 36.3
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 8.1e-10 67.8 124 36.3
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 1.4e-09 67.0 126 38.9
Sopen02g019050 Solanum pennellii HOM05D005932 ORTHO05D006213 1.4e-09 67.0 130 39.2
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 1.8e-09 66.6 145 35.9
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 1.8e-09 66.6 135 36.3
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 3.1e-09 65.9 128 39.8
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 4.0e-09 65.5 139 38.8
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 5.2e-09 65.1 129 35.7
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 8.9e-09 64.3 129 38.8
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 1.2e-08 63.9 124 40.3
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.5e-08 63.5 132 37.9
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 2.0e-08 63.2 117 41.0
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 2.0e-08 63.2 136 35.3
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 2.0e-08 63.2 126 37.3
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 2.6e-08 62.8 145 37.2
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 3.4e-08 62.4 133 38.3
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 4.4e-08 62.0 122 40.2
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 4.4e-08 62.0 119 38.7
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 4.4e-08 62.0 113 37.2
PGSC0003DMG400021122 Solanum tuberosum HOM05D005932 ORTHO05D006213 4.4e-08 62.0 143 35.7
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 5.8e-08 61.6 113 34.5
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 7.6e-08 61.2 106 39.6
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 9.9e-08 60.8 122 37.7
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 9.9e-08 60.8 122 37.7
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 9.9e-08 60.8 122 37.7
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 9.9e-08 60.8 128 39.1
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.7e-07 60.1 112 38.4
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.7e-07 60.1 123 36.6
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 2.2e-07 59.7 131 35.9
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 2.9e-07 59.3 122 41.0
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 4.9e-07 58.5 118 36.4
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 4.9e-07 58.5 134 39.6
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 6.4e-07 58.2 120 38.3
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 6.4e-07 58.2 127 35.4
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 8.4e-07 57.8 135 37.0
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 8.4e-07 57.8 128 35.9
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 8.4e-07 57.8 109 38.5
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 8.4e-07 57.8 128 36.7
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.1e-06 57.4 128 37.5
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 1.1e-06 57.4 133 35.3
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.4e-06 57.0 113 37.2
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.9e-06 56.6 111 40.5
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 1.9e-06 56.6 115 41.7
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 2.4e-06 56.2 114 40.4
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 4.2e-06 55.5 115 36.5
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 7.1e-06 54.7 115 35.7
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 7.1e-06 54.7 145 35.2


User provided reference genes

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