Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 3359.3 1720 100.0
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2716.8 1743 80.3
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2659.0 1742 80.0
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2588.1 1775 76.4
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2479.1 1713 74.1
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2432.5 1741 72.0
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2405.2 1738 70.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2402.1 1740 70.5
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2399.8 1715 71.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2390.1 1738 69.6
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2384.0 1742 70.6
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2375.9 1740 70.6
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2368.6 1737 70.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2361.3 1724 69.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2345.9 1717 69.9
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2345.1 1705 69.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2343.5 1737 69.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2332.0 1721 70.2
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2322.4 1719 69.3
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2320.0 1745 69.2
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2311.2 1740 68.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2310.4 1726 68.4
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2296.2 1699 69.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2289.6 1718 68.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2286.1 1738 67.7
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2285.0 1742 68.0
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2274.6 1731 67.5
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2268.8 1720 68.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2267.7 1738 68.1
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2266.5 1748 67.0
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2263.4 1738 67.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2262.3 1730 67.3
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2258.8 1742 67.1
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2247.2 1739 67.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1738 66.9
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1738 67.1
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2244.9 1627 70.8
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2237.2 1724 66.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2234.1 1698 67.8
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2230.3 1738 67.1
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2224.5 1727 67.6
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2224.1 1748 66.6
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2214.9 1745 66.3
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2201.4 1706 66.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2191.8 1728 66.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2187.5 1708 67.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2183.7 1716 65.3
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2182.9 1740 65.6
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2181.4 1714 66.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2172.9 1699 66.3
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2163.7 1801 63.7
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2158.3 1716 64.3
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2147.9 1704 65.3
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2137.5 1589 68.7
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2137.1 1664 65.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2130.9 1717 64.6
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2128.2 1691 65.5
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2125.1 1743 62.4
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2119.0 1714 64.1
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2117.0 1707 64.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2112.8 1890 60.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2108.2 1717 63.8
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2107.8 1709 64.0
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2105.1 1736 63.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2104.3 1706 64.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2097.4 1706 63.4
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2096.6 1704 63.6
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2094.3 1751 63.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2088.9 1711 64.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 2088.5 1814 63.9
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2085.5 1770 62.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2076.6 1714 63.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2076.2 1720 63.6
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2067.7 1805 61.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2066.6 1713 63.7
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2064.3 1711 63.4
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2060.4 2161 54.2
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2042.3 1722 62.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2039.2 1746 61.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2034.6 1414 71.0
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2018.8 1684 61.9
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1978.8 1708 60.4
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1943.7 1695 61.5
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1917.9 1697 59.9
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1913.3 1712 57.7
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1908.6 1756 57.9
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1898.2 1295 69.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1885.2 1697 58.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1867.4 1291 68.4
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1826.2 1456 63.9
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1823.9 1159 74.7
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1731.5 1467 62.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1708.3 1620 55.5
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1679.1 1701 53.0
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1662.5 1732 52.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1658.7 1727 53.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1611.7 1756 54.3
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1610.5 1647 52.5
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1536.5 1044 70.8
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1512.7 936 78.4
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1461.8 1082 64.6
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1361.7 1110 66.1
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1317.4 1338 54.5
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1265.8 1105 62.3
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1256.5 1167 59.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1133.6 936 65.8
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1089.7 910 60.3
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.3e-280 969.5 616 76.9
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 4.3e-280 969.1 740 64.9
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.9e-252 876.7 681 61.5
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 5.5e-251 872.5 1593 37.2
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.1e-249 865.9 820 59.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.8e-247 860.1 600 68.8
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.5e-245 854.4 552 74.8
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 7.5e-208 729.2 847 43.6
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.1e-181 641.3 426 72.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 2.4e-158 564.7 376 74.2
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 6.2e-154 550.1 329 80.9
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 5.7e-147 526.9 612 56.4
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 2.7e-141 508.1 571 56.0
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.6e-123 448.4 906 33.0
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.2e-115 422.9 699 37.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 3.4e-107 394.8 336 63.7
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 3.1e-105 388.3 428 45.8
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.9e-102 379.0 513 52.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 2.5e-102 378.6 241 75.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 4.5e-96 357.8 247 66.8
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.7e-95 355.9 215 73.0
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.5e-80 305.1 192 76.6
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 9.8e-75 287.0 388 50.0
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.7e-66 259.6 176 68.8
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.8e-61 242.3 175 65.1
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.7e-61 241.5 153 71.9
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 2.2e-50 206.1 409 39.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.2e-49 202.2 203 47.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 4.6e-48 198.4 115 84.3
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.9e-42 178.3 98 90.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.8e-37 161.8 129 57.4
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 5.8e-35 154.8 168 51.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 4.9e-34 151.8 114 60.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 2.5e-30 139.4 188 45.7
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.3e-29 137.1 123 54.5
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 2.9e-26 125.9 222 40.1
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 8.5e-26 124.4 301 39.5
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 3.2e-25 122.5 71 83.1
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.1e-24 119.8 63 93.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 3.3e-22 112.5 83 63.9
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.3e-22 112.1 88 61.4
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 9.7e-22 110.9 93 61.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.3e-21 110.5 106 54.7
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 4.8e-21 108.6 73 76.7
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-20 107.5 59 83.1
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 5.3e-20 105.1 214 36.4
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.7e-18 100.1 57 87.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 2.2e-18 99.8 305 34.8
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.9e-15 89.0 98 43.9
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 4.4e-14 85.5 76 56.6
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.7e-13 83.6 48 85.4
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 4.8e-13 82.0 289 33.9
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 8.2e-13 81.3 91 48.4
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.1e-12 79.0 52 75.0
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.2e-11 77.4 51 62.7
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.6e-11 76.3 58 60.3
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.0e-10 72.0 88 43.2
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 9.4e-09 67.8 165 31.5
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.2e-08 67.4 43 60.5
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.2e-08 67.4 40 75.0
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.6e-08 67.0 44 70.5
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.7e-08 66.2 97 40.2
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.4e-07 63.9 36 77.8
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 3.0e-07 62.8 57 52.6
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 6.7e-07 61.6 162 30.9
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 9.7e-06 57.8 49 63.3


User provided reference genes

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