Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.7e-190 669.1 315 100.0
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.8e-137 492.3 313 74.1
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 2.4e-128 462.6 314 69.7
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 3.2e-125 452.2 316 69.0
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 8.8e-123 444.1 321 67.0
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 8.3e-121 437.6 319 67.1
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 1.4e-120 436.8 314 66.9
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 5.9e-119 431.4 320 63.8
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 1.7e-118 429.9 320 65.0
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 2.9e-118 429.1 315 65.7
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.9e-118 429.1 315 65.1
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 3.8e-118 428.7 315 65.1
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 6.5e-118 427.9 316 65.5
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.9e-117 426.4 315 65.1
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.5e-117 426.0 316 65.8
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 9.5e-117 424.1 314 65.3
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.2e-116 423.7 316 65.5
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 2.1e-116 422.9 323 64.1
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 3.6e-116 422.2 314 64.6
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 4.7e-116 421.8 334 62.9
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.1e-116 421.4 316 65.5
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.8e-115 419.9 354 59.9
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 2.3e-115 419.5 318 64.2
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 3.0e-115 419.1 324 62.7
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 3.0e-115 419.1 317 65.3
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 8.8e-115 417.5 314 63.7
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 7.5e-114 414.5 320 61.6
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 9.8e-114 414.1 313 64.5
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 9.8e-114 414.1 323 63.2
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.7e-113 413.3 316 63.6
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 1.7e-113 413.3 318 63.2
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.2e-113 412.9 318 63.5
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 3.7e-113 412.1 323 63.8
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.7e-113 412.1 314 63.1
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 8.3e-113 411.0 321 64.5
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 1.4e-112 410.2 317 61.2
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.4e-112 410.2 317 61.8
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.8e-112 409.8 317 60.9
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 2.4e-112 409.5 316 63.6
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.1e-112 409.1 315 65.1
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 7.0e-112 407.9 316 63.0
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 7.0e-112 407.9 315 61.9
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 7.0e-112 407.9 318 62.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 9.2e-112 407.5 321 62.3
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 1.2e-111 407.1 317 62.5
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.2e-111 407.1 318 63.8
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 1.2e-111 407.1 313 62.0
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 1.6e-111 406.8 320 62.2
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 1.6e-111 406.8 323 61.3
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.0e-111 406.4 318 63.2
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 2.9e-110 402.5 315 62.5
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 6.6e-110 401.4 327 60.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 8.6e-110 401.0 315 61.6
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 8.6e-110 401.0 321 61.1
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.1e-109 400.6 314 61.1
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 4.3e-109 398.7 315 61.0
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 4.3e-109 398.7 315 61.0
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 4.3e-109 398.7 326 60.7
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.6e-108 396.7 322 60.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.6e-108 396.7 314 62.4
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 2.1e-108 396.4 315 61.0
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.8e-108 396.0 323 60.7
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 3.6e-108 395.6 322 60.2
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.0e-107 394.0 315 61.0
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.0e-107 392.1 272 70.2
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 8.9e-107 391.0 315 61.3
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.5e-106 390.2 318 59.4
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.3e-105 387.1 316 60.4
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 3.7e-105 385.6 323 59.4
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.4e-104 383.6 320 60.6
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.3e-102 377.1 329 57.1
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.3e-102 377.1 365 53.7
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.5e-101 373.6 313 58.5
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.9e-101 373.2 237 75.9
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.6e-100 370.2 317 58.7
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 6.2e-100 368.2 323 55.1
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.4e-99 367.1 320 59.4
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.3e-99 366.3 323 55.7
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 2.3e-99 366.3 318 55.0
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 4.4e-98 362.1 253 68.8
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.4e-98 362.1 293 59.4
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 5.4e-96 355.1 240 72.9
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 4.6e-95 352.1 318 56.6
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.6e-93 345.1 316 56.3
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.3e-91 339.7 237 69.6
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 5.2e-91 338.6 323 54.2
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.4e-90 335.9 325 54.8
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 5.8e-90 335.1 230 66.5
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 9.9e-90 334.3 330 52.7
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 5.4e-88 328.6 335 52.2
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.6e-87 327.0 322 53.4
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.1e-87 326.6 339 51.9
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 6.6e-86 321.6 319 48.9
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.5e-85 320.5 317 54.3
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 4.3e-85 318.9 316 55.4
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 9.6e-77 291.2 309 48.9
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 8.1e-76 288.1 312 48.4
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.4e-75 287.3 321 49.8
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.4e-75 286.6 241 58.1
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 6.0e-71 271.9 318 49.1
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.1e-69 267.7 249 52.2
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 4.8e-68 262.3 287 50.5
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 8.1e-68 261.5 251 55.8
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 3.1e-67 259.6 211 59.7
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 5.3e-67 258.8 172 68.0
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 2.6e-66 256.5 236 53.0
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.9e-65 253.1 177 70.6
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 7.4e-61 238.4 156 68.6
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.6e-60 237.3 316 41.1
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 3.4e-58 229.6 174 64.4
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 3.2e-56 223.0 127 78.7
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.3e-54 216.9 164 64.6
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.0e-54 216.5 216 49.5
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 6.3e-44 182.2 146 66.4
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.1e-43 181.4 143 58.0
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 7.6e-42 175.3 223 41.3
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.5e-40 170.2 141 53.9
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 7.2e-40 168.7 232 41.4
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.5e-37 161.0 456 28.9
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.0e-34 150.6 170 47.6
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 4.5e-34 149.4 116 60.3
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 5.9e-34 149.1 236 37.3
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.0e-33 148.3 269 35.7
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.0e-22 111.7 61 82.0
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 2.0e-21 107.5 67 68.7
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.7e-17 94.4 53 77.4
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 5.5e-16 89.4 57 59.6
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 8.8e-14 82.0 51 70.6
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 8.2e-12 75.5 48 66.7
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 7.2e-08 62.4 42 59.5
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 7.2e-08 62.4 31 87.1
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 1.0e-06 58.5 31 83.9
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.8e-06 57.8 36 66.7


User provided reference genes

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