Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 4.0e-78 294.7 144 100.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.2e-52 209.1 135 74.1
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.3e-49 199.9 135 71.9
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 3.9e-49 198.4 135 68.1
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.9e-49 198.4 135 71.1
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 8.6e-49 197.2 136 70.6
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 1.1e-48 196.8 134 70.1
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.3e-48 195.3 136 69.9
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.3e-48 194.9 137 70.8
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.2e-47 193.4 135 71.1
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 2.1e-47 192.6 134 69.4
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 2.8e-47 192.2 135 68.9
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.8e-47 192.2 135 68.9
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 8.0e-47 190.7 135 68.1
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.2e-44 182.6 135 65.9
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.6e-42 176.4 135 65.9
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 7.8e-42 174.1 136 65.4
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 7.8e-42 174.1 137 62.0
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 1.0e-41 173.7 137 67.2
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.7e-41 172.9 135 65.9
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 5.0e-41 171.4 137 62.8
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 6.6e-41 171.0 137 63.5
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.6e-41 171.0 165 56.4
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.6e-41 171.0 165 56.4
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 1.1e-40 170.2 139 66.9
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.1e-40 170.2 117 70.9
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.1e-40 170.2 137 66.4
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.1e-40 170.2 139 66.9
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.5e-40 169.1 130 66.2
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 3.3e-40 168.7 138 63.8
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 4.3e-40 168.3 135 61.5
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.2e-39 166.8 137 59.9
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.6e-39 166.4 137 58.4
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.6e-39 166.4 137 59.1
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 2.1e-39 166.0 136 62.5
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 2.8e-39 165.6 136 60.3
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 3.6e-39 165.2 137 58.4
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 3.6e-39 165.2 137 58.4
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 3.6e-39 165.2 137 63.5
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 4.7e-39 164.9 137 59.1
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 4.7e-39 164.9 135 57.8
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 8.1e-39 164.1 136 62.5
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 8.1e-39 164.1 136 62.5
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 8.1e-39 164.1 141 62.4
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 8.1e-39 164.1 137 61.3
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 2.3e-38 162.5 137 62.0
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 3.1e-38 162.2 137 61.3
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 4.0e-38 161.8 135 61.5
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 4.0e-38 161.8 137 59.1
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 5.2e-38 161.4 139 57.6
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 5.2e-38 161.4 137 62.8
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 6.8e-38 161.0 136 59.6
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 8.9e-38 160.6 137 59.1
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.2e-37 160.2 136 58.8
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.2e-37 160.2 136 58.8
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.2e-37 160.2 136 58.8
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.5e-37 159.8 136 62.5
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 2.0e-37 159.5 137 61.3
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 4.4e-37 158.3 137 60.6
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 5.8e-37 157.9 136 59.6
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 7.5e-37 157.5 139 56.8
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 9.9e-37 157.1 137 60.6
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 9.9e-37 157.1 137 56.9
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.3e-36 156.8 137 58.4
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.7e-36 156.4 114 66.7
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 1.7e-36 156.4 106 70.8
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 4.9e-36 154.8 140 60.0
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 8.3e-36 154.1 106 67.9
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 8.3e-36 154.1 137 54.0
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.1e-35 153.7 136 56.6
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 4.1e-35 151.8 137 58.4
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 4.1e-35 151.8 138 62.3
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.2e-34 150.2 140 57.9
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.2e-34 150.2 186 46.8
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.2e-34 150.2 135 57.8
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 6.0e-34 147.9 137 56.2
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 7.8e-34 147.5 139 50.4
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.7e-33 146.4 138 58.7
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 2.3e-33 146.0 137 53.3
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 2.3e-33 146.0 114 63.2
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.0e-33 145.6 139 55.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 3.0e-33 145.6 138 55.1
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 3.9e-33 145.2 138 58.7
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 5.1e-33 144.8 137 54.7
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 6.6e-33 144.4 102 65.7
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 6.6e-33 144.4 138 54.3
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 1.5e-32 143.3 141 47.5
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 1.9e-32 142.9 140 56.4
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.5e-32 142.5 140 49.3
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 2.5e-32 142.5 137 54.0
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 5.6e-32 141.4 92 67.4
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 5.6e-32 141.4 139 46.8
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 9.5e-32 140.6 112 65.2
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.1e-31 139.4 136 52.2
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 2.1e-31 139.4 117 57.3
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.8e-31 139.0 136 56.6
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 6.2e-31 137.9 106 64.2
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.4e-30 136.7 136 52.2
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 1.8e-30 136.3 119 57.1
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.1e-30 135.6 139 45.3
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 4.0e-30 135.2 137 52.6
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 6.8e-30 134.4 136 50.7
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 6.8e-30 134.4 147 48.3
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.5e-29 133.3 122 62.3
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 2.6e-29 132.5 136 50.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.6e-29 132.5 137 49.6
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 3.4e-29 132.1 117 57.3
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.9e-28 129.0 121 53.7
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 3.8e-28 128.6 136 49.3
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.8e-28 128.6 140 52.1
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 4.9e-28 128.3 139 46.0
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.1e-27 127.1 172 47.7
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 1.4e-27 126.7 136 49.3
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 2.4e-27 125.9 137 49.6
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.4e-27 124.8 120 54.2
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 9.2e-27 124.0 136 48.5
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.2e-26 123.6 136 48.5
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.2e-26 123.6 136 48.5
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.2e-26 123.6 136 48.5
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.2e-26 123.6 136 48.5
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.6e-26 123.2 136 48.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.6e-26 123.2 136 48.5
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 4.6e-26 121.7 136 47.8
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 6.0e-26 121.3 136 47.8
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 7.8e-26 120.9 136 47.8
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.0e-25 120.6 135 48.1
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.1e-24 117.1 76 73.7
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 5.6e-24 114.8 86 61.6
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.1e-23 112.8 85 57.6
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 2.1e-23 112.8 76 71.1
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 2.8e-23 112.5 149 43.6
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 4.7e-23 111.7 109 53.2
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 9.0e-22 107.5 137 45.3
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 2.6e-21 105.9 98 50.0
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.4e-19 99.4 145 40.7
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 9.3e-19 97.4 77 64.9
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.5e-16 90.1 106 42.5
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.1e-15 86.3 136 43.4
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 2.8e-15 85.9 78 57.7
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.5e-13 80.1 77 54.5
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 3.2e-11 72.4 110 44.5
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 5.4e-11 71.6 45 71.1
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.3e-09 66.2 83 49.4
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 6.7e-09 64.7 85 44.7
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 8.7e-09 64.3 87 42.5
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.5e-08 63.5 87 42.5
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 5.6e-08 61.6 75 48.0
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 9.0e-06 54.3 54 51.9
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 9.0e-06 54.3 84 42.9


User provided reference genes

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