Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.2e-170 601.3 303 100.0
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 5.2e-104 381.7 221 84.2
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.0e-101 371.3 235 77.9
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.0e-101 371.3 235 77.9
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.5e-95 353.6 216 76.4
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.1e-93 345.5 225 75.6
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 5.4e-93 345.1 230 73.0
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 2.7e-92 342.8 222 76.1
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 5.9e-92 341.7 220 76.4
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.0e-91 340.9 225 75.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.9e-91 339.3 229 73.4
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 5.6e-90 335.1 238 71.8
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 3.0e-88 329.3 227 72.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 8.9e-88 327.8 225 73.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.5e-87 327.0 242 69.4
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 9.8e-87 324.3 239 67.4
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.3e-86 323.9 235 70.6
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 6.4e-86 321.6 252 66.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.3e-86 321.2 231 68.8
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.0e-84 316.6 221 69.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.7e-84 316.2 219 71.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.7e-84 316.2 226 71.7
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 5.9e-84 315.1 240 67.1
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.3e-83 313.9 225 69.3
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.3e-83 313.9 237 68.4
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.3e-83 313.9 235 66.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.7e-83 313.5 224 70.5
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.3e-83 313.2 235 67.7
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.0e-83 312.8 222 71.6
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 3.0e-83 312.8 235 68.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.0e-83 312.8 219 68.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.0e-83 312.8 234 67.9
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.9e-82 310.1 236 67.8
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 3.3e-82 309.3 220 70.5
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.3e-82 309.3 228 69.3
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.3e-82 309.3 224 70.1
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 5.6e-82 308.5 235 66.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.6e-82 308.5 236 68.6
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 7.3e-82 308.1 235 66.8
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 7.3e-82 308.1 228 68.9
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 7.3e-82 308.1 204 72.5
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.5e-82 307.8 228 68.9
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.2e-81 307.4 235 65.5
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.6e-81 307.0 266 60.5
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.6e-81 307.0 236 67.4
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-81 306.6 237 65.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.6e-81 305.8 224 68.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 8.0e-81 304.7 235 65.1
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-80 303.1 221 69.2
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 3.1e-80 302.8 221 68.8
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.1e-80 302.8 221 69.2
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.1e-80 302.8 239 64.0
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 4.0e-80 302.4 235 64.7
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.0e-80 302.4 219 69.4
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 5.2e-80 302.0 224 65.6
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 5.2e-80 302.0 217 70.0
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.8e-80 301.6 221 69.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.9e-80 301.2 225 67.6
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.0e-79 300.1 216 68.5
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.0e-79 300.1 236 65.7
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.0e-79 300.1 216 69.4
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-79 300.1 224 68.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.0e-79 300.1 228 64.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-79 299.7 221 69.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.6e-79 299.7 236 64.4
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.4e-79 299.3 216 68.1
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.4e-79 299.3 226 66.8
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 3.4e-79 299.3 258 61.6
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 3.4e-79 299.3 219 71.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.8e-79 298.5 219 68.5
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 7.5e-79 298.1 221 68.3
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.3e-78 297.4 225 68.9
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.7e-78 297.0 223 68.2
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-78 296.2 236 64.4
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.9e-78 296.2 224 67.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.9e-78 296.2 235 66.4
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.4e-78 295.0 229 67.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 6.4e-78 295.0 236 64.0
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 6.4e-78 295.0 239 63.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 8.3e-78 294.7 236 63.1
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.9e-77 293.5 247 60.7
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.9e-77 293.5 227 65.6
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.4e-77 293.1 228 64.5
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 4.1e-77 292.4 220 67.7
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 9.2e-77 291.2 207 67.1
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 9.2e-77 291.2 228 67.1
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 9.2e-77 291.2 219 65.8
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.2e-76 290.8 293 54.9
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.2e-76 290.8 216 66.7
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.7e-76 289.7 217 67.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.5e-76 289.3 208 67.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.5e-76 289.3 204 72.1
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.5e-76 289.3 204 72.1
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.8e-76 288.1 219 65.3
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.0e-75 287.7 208 67.3
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.0e-75 287.7 203 70.4
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.7e-75 287.0 229 62.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.3e-75 286.6 225 65.8
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.9e-75 285.8 208 66.3
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 3.9e-75 285.8 207 65.7
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 5.0e-75 285.4 207 65.7
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-74 284.3 209 65.6
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.5e-74 283.1 218 63.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.5e-74 283.1 222 66.7
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.5e-74 283.1 242 62.0
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.3e-74 282.7 227 62.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 4.3e-74 282.3 208 65.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 4.3e-74 282.3 208 65.4
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 9.5e-74 281.2 244 60.7
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.4e-72 277.3 220 64.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.8e-72 276.9 202 67.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.8e-72 275.0 330 49.1
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.0e-71 273.5 235 61.3
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 2.6e-71 273.1 235 61.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 2.6e-71 273.1 223 59.6
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 5.8e-71 271.9 217 62.7
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.9e-69 266.9 209 61.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.2e-69 266.2 169 78.1
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 5.4e-69 265.4 236 60.6
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.3e-66 256.1 223 61.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 7.3e-66 255.0 170 75.3
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 9.5e-66 254.6 200 60.5
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 6.2e-65 251.9 231 61.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.4e-62 241.9 230 59.6
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-61 240.7 163 72.4
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.2e-60 237.7 214 57.9
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.3e-59 233.4 189 63.5
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.9e-58 230.3 228 53.5
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.6e-57 226.1 175 58.9
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.0e-56 222.6 230 50.4
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 9.0e-56 221.5 203 58.1
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.2e-55 221.1 224 53.1
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 4.9e-54 215.7 184 56.0
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.1e-53 214.5 174 62.1
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 5.4e-53 212.2 157 69.4
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 7.1e-53 211.8 239 45.2
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.3e-51 207.6 126 76.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.3e-51 206.8 166 63.9
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 6.6e-51 205.3 145 72.4
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.9e-50 203.8 117 80.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.6e-49 200.7 128 78.1
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 5.3e-48 195.7 222 49.5
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.2e-47 194.5 129 72.1
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 4.5e-47 192.6 159 63.5
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.7e-44 183.3 217 49.3
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 9.0e-40 168.3 298 36.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 2.6e-39 166.8 104 72.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.0e-35 154.8 189 48.7
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.1e-33 147.1 188 44.7
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-29 134.4 121 62.0
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 5.5e-29 132.5 178 46.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-27 127.9 81 72.8
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.5e-23 114.4 159 45.9
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.0e-23 114.0 75 72.0
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.6e-23 113.6 96 58.3
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 2.6e-23 113.6 103 60.2
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 5.9e-23 112.5 64 73.4
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 2.9e-22 110.2 103 58.3
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.6e-20 103.2 67 74.6
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 4.3e-18 96.3 167 38.3
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.4e-18 95.5 110 48.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 9.7e-18 95.1 92 55.4
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 6.3e-17 92.4 57 75.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.4e-16 91.3 112 45.5
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.8e-16 90.9 176 34.7
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.5e-15 87.8 135 40.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.5e-15 87.8 152 40.8
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.9e-15 85.9 113 48.7
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.2e-14 84.0 188 33.0
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 3.0e-11 73.6 79 49.4
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.1e-10 71.6 46 71.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.4e-08 63.9 45 62.2
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-07 61.6 52 59.6
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.2e-06 57.4 34 64.7


User provided reference genes

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