Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 0.0e+00 1454.1 733 100.0
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 2.6e-218 762.7 707 58.8
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.1e-187 661.0 738 53.0
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.4e-187 660.6 741 51.4
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 6.1e-183 645.2 742 50.3
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 1.1e-173 614.4 741 50.3
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.7e-161 573.9 727 48.4
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.3e-156 557.8 732 48.0
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.6e-145 518.8 804 43.4
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.2e-143 514.6 751 45.0
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.5e-141 507.7 769 44.2
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.4e-141 506.1 746 43.8
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 2.3e-137 493.8 760 44.5
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 3.9e-137 493.0 738 44.6
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.5e-136 491.1 718 44.7
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.2e-134 482.6 752 43.1
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 3.7e-132 476.5 750 43.5
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.6e-127 461.1 767 40.2
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 3.6e-127 459.9 743 42.5
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 3.6e-127 459.9 746 41.4
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 8.1e-127 458.8 750 41.5
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.2e-124 450.7 750 41.1
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.2e-122 444.9 751 41.3
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 3.5e-122 443.4 775 40.9
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 6.2e-119 432.6 746 41.2
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 6.2e-119 432.6 750 40.5
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 4.0e-118 429.9 762 40.7
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 4.9e-116 422.9 752 40.0
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 4.1e-115 419.9 760 39.7
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.6e-114 417.9 752 40.2
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.1e-114 417.5 760 39.7
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.0e-113 415.2 717 41.3
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.0e-113 415.2 756 39.8
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.3e-113 414.8 729 40.3
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.5e-112 411.4 745 40.0
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 9.6e-112 408.7 728 40.0
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.1e-110 405.2 749 39.4
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.1e-110 405.2 729 39.9
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 6.9e-110 402.5 877 34.7
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 9.0e-110 402.1 779 38.5
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.6e-109 400.6 774 38.4
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 3.4e-109 400.2 821 37.1
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 4.4e-109 399.8 648 42.1
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 7.6e-109 399.1 725 40.8
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 2.9e-108 397.1 554 46.2
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 8.4e-108 395.6 769 38.1
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 4.2e-107 393.3 769 37.6
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 5.4e-107 392.9 757 38.4
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 9.3e-107 392.1 769 38.2
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 3.5e-106 390.2 773 37.3
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 2.3e-105 387.5 748 39.4
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.6e-103 381.3 906 32.8
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 8.1e-103 379.0 719 38.8
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 1.1e-102 378.6 733 37.2
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 5.3e-102 376.3 763 37.6
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 1.5e-101 374.8 774 37.6
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 3.4e-101 373.6 753 37.6
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 7.6e-101 372.5 779 38.3
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 4.9e-100 369.8 780 35.1
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 5.4e-99 366.3 751 37.3
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 7.1e-99 365.9 751 38.2
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 3.8e-92 343.6 751 36.9
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 9.3e-91 339.0 752 37.4
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.6e-90 338.2 737 36.5
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 3.5e-90 337.0 781 35.9
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.8e-89 334.7 750 37.5
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.1e-88 332.0 779 35.3
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.9e-88 331.3 781 35.7
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 5.6e-88 329.7 782 35.9
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.9e-86 322.8 784 35.1
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 2.2e-84 317.8 735 34.3
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.9e-83 314.7 770 33.5
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 2.7e-82 310.8 732 35.7
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 5.1e-81 306.6 761 35.1
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.2e-77 295.4 780 33.5
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 9.4e-75 285.8 776 32.5
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.2e-74 285.4 701 34.8
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 2.7e-74 284.3 742 34.2
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.9e-73 280.4 803 33.0
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 5.1e-73 280.0 791 32.5
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.3e-72 276.9 763 34.1
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 7.2e-67 259.6 761 33.8
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 9.4e-67 259.2 684 33.0
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.1e-66 256.5 767 29.3
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.5e-64 251.9 738 32.4
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 3.3e-64 250.8 743 31.9
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 5.7e-64 250.0 767 32.3
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 8.2e-63 246.1 751 31.8
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.1e-62 244.2 759 29.4
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 4.1e-62 243.8 738 32.4
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 1.5e-61 241.9 298 47.0
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 3.4e-61 240.7 746 32.2
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 3.4e-61 240.7 762 30.8
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 2.2e-60 238.0 782 30.9
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 3.8e-60 237.3 768 31.8
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 1.4e-59 235.3 695 32.8
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 1.4e-59 235.3 752 33.0
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.9e-59 235.0 794 29.8
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 2.7e-58 231.1 755 30.9
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 3.6e-58 230.7 748 31.3
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 6.1e-58 229.9 690 32.0
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 8.0e-58 229.6 756 31.0
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 3.9e-57 227.3 750 31.3
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 3.7e-55 220.7 762 30.7
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 3.7e-55 220.7 797 30.6
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 3.7e-55 220.7 797 30.6
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 3.1e-54 217.6 791 29.5
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 3.1e-54 217.6 790 29.6
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 5.3e-54 216.9 719 30.7
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 8.5e-52 209.5 795 28.6
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 3.2e-51 207.6 799 28.9
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 3.2e-51 207.6 799 28.9
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 1.6e-50 205.3 807 29.1
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 2.1e-50 204.9 732 29.6
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.0e-48 198.4 809 29.5
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.0e-48 198.4 706 29.2
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.0e-44 186.0 711 28.4
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 2.1e-42 178.3 796 28.8
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 2.1e-42 178.3 787 28.6
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.8e-41 175.3 781 28.6
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.8e-41 175.3 787 28.8
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 4.0e-41 174.1 789 28.5
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 3.7e-39 167.5 735 28.0
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 3.1e-38 164.5 172 53.5
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.3e-31 142.5 717 26.6
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 2.2e-31 141.7 714 27.3
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 2.8e-31 141.4 126 58.7
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 8.3e-31 139.8 726 26.3
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.3e-25 121.7 96 64.6
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 1.2e-21 109.4 868 24.9
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 2.1e-13 82.0 740 23.2
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 3.9e-12 77.8 755 23.3
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 1.9e-11 75.5 268 29.5
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.1e-09 69.7 47 68.1
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 4.9e-07 60.8 808 21.3
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 6.4e-07 60.5 166 32.5


User provided reference genes

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