Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 3.9e-218 761.1 375 100.0
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 1.8e-154 549.7 366 74.3
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 8.6e-141 504.2 356 70.8
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 3.4e-137 492.3 345 70.1
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 4.1e-135 485.3 351 67.8
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.6e-134 483.4 350 67.4
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.0e-133 480.7 347 68.0
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 1.0e-133 480.7 346 67.1
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 5.0e-133 478.4 343 67.1
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 3.3e-132 475.7 361 64.3
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 4.3e-132 475.3 350 66.3
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.6e-131 473.4 344 66.3
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 5.2e-130 468.4 344 66.3
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 1.7e-128 463.4 350 66.0
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.9e-127 459.9 333 64.6
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.4e-127 459.5 332 64.8
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 3.2e-127 459.1 350 65.7
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 5.4e-127 458.4 367 61.9
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 3.0e-125 452.6 369 64.5
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.9e-124 449.9 372 60.2
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 5.6e-124 448.4 327 65.4
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 7.3e-124 448.0 343 64.1
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 3.6e-123 445.7 336 64.3
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 4.0e-122 442.2 356 62.1
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 8.9e-122 441.0 364 58.8
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 3.4e-121 439.1 337 64.4
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 5.8e-121 438.3 328 67.4
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.7e-120 436.8 329 63.8
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 2.9e-120 436.0 341 63.9
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 8.3e-120 434.5 370 58.1
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 2.4e-119 433.0 362 60.2
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.2e-119 432.6 328 64.3
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 3.2e-119 432.6 365 60.3
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 4.1e-119 432.2 335 63.0
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.6e-118 430.3 369 60.7
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.7e-118 429.5 367 56.9
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.5e-118 429.1 326 61.7
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 6.0e-118 428.3 344 61.6
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 6.0e-118 428.3 365 57.3
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 2.3e-117 426.4 327 63.9
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 3.9e-117 425.6 326 63.2
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 6.6e-117 424.9 331 63.4
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 8.6e-117 424.5 364 58.8
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 2.5e-116 422.9 355 59.7
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 5.6e-116 421.8 364 56.0
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 5.6e-116 421.8 369 58.5
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 5.6e-116 421.8 371 57.7
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 1.6e-115 420.2 366 58.5
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 2.8e-115 419.5 363 59.0
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 3.6e-115 419.1 342 60.5
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 6.2e-115 418.3 361 57.9
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 6.2e-115 418.3 332 63.3
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 1.4e-114 417.2 336 61.0
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.8e-114 416.8 365 58.9
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 4.0e-114 415.6 344 60.8
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 4.4e-113 412.1 328 61.0
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 9.9e-113 411.0 328 60.7
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 9.9e-113 411.0 344 59.6
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.9e-112 409.5 379 55.9
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 3.7e-112 409.1 334 59.9
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.4e-111 407.1 358 57.8
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 1.4e-111 407.1 329 62.0
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 3.5e-110 402.5 326 59.2
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.5e-110 402.5 316 62.7
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 4.6e-110 402.1 342 59.1
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 5.1e-109 398.7 346 57.2
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.1e-108 397.5 360 55.3
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.9e-108 396.7 338 57.7
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 4.3e-108 395.6 309 62.5
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.8e-107 392.9 357 54.3
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 4.7e-107 392.1 338 56.2
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 1.1e-106 391.0 354 55.9
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 1.1e-106 391.0 354 56.8
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-106 391.0 288 65.6
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 2.4e-106 389.8 327 59.3
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 4.0e-106 389.0 329 59.0
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 4.0e-106 389.0 326 58.6
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 6.8e-106 388.3 303 62.4
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 1.2e-105 387.5 366 54.1
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.5e-105 387.1 335 57.6
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 2.0e-105 386.7 294 63.6
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 2.6e-105 386.3 327 58.7
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 7.6e-105 384.8 334 56.3
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.7e-104 383.6 372 54.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 4.2e-103 379.0 324 58.6
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 5.4e-103 378.6 324 59.0
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 2.1e-102 376.7 362 54.1
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 4.6e-102 375.6 324 58.0
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 3.9e-101 372.5 364 55.5
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 2.5e-100 369.8 286 63.3
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.3e-100 369.4 343 56.3
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.9e-95 353.6 380 49.2
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.2e-94 350.9 251 66.9
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 9.0e-90 334.7 324 53.4
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 6.4e-88 328.6 262 63.0
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 9.3e-87 324.7 242 61.6
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 6.9e-82 308.5 235 66.8
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.0e-80 304.7 287 50.9
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 2.5e-79 300.1 325 49.2
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 2.1e-78 297.0 330 46.1
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.6e-75 287.3 234 61.1
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 6.9e-74 282.0 252 56.7
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 7.6e-73 278.5 461 36.9
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 8.4e-72 275.0 444 37.4
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.8e-69 267.3 297 49.5
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 6.7e-69 265.4 299 50.2
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.5e-68 264.2 211 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 3.3e-68 263.1 357 42.3
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 7.4e-68 261.9 280 50.4
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 9.7e-68 261.5 223 62.8
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 2.7e-62 243.4 250 54.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.5e-60 237.7 218 53.2
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.0e-53 214.9 361 36.3
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 1.4e-50 204.5 158 65.2
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 1.9e-47 194.1 374 34.8
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.2e-45 186.0 165 58.2
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.4e-42 177.9 124 63.7
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 2.4e-42 177.2 502 28.3
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 4.5e-41 172.9 126 65.9
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 1.1e-39 168.3 374 31.6
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 7.2e-39 165.6 174 54.6
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 1.4e-37 161.4 125 57.6
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 3.1e-34 150.2 109 69.7
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 2.9e-32 143.7 123 50.4
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.2e-25 121.7 85 67.1
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 7.7e-25 119.0 100 56.0
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 7.2e-23 112.5 173 42.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-17 94.7 63 65.1
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 2.0e-17 94.4 137 45.3
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 4.6e-09 66.6 58 65.5
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.1e-07 62.0 121 38.0
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 9.5e-07 58.9 180 28.9


User provided reference genes

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