Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15969 Avicennia marina HOM05D007956 ORTHO05D010152 0.0e+00 1180.2 618 100.0
Migut.M01290 Erythranthe guttata HOM05D007956 ORTHO05D010152 1.9e-190 669.8 589 60.3
SalBow8G0305 Salvia bowleyana HOM05D007956 ORTHO05D010152 4.6e-184 648.7 567 57.8
SGA_v2.0_scaffold114G32030 Striga asiatica HOM05D007956 ORTHO05D010152 1.2e-176 624.0 572 53.8
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 2.3e-159 566.6 567 50.8
Cc02_g11640 Coffea canephora HOM05D007956 ORTHO05D010152 9.1e-140 501.5 560 47.3
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 6.6e-138 495.4 568 46.0
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 1.8e-135 487.3 568 45.4
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 2.2e-133 480.3 555 45.8
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 1.1e-129 468.0 568 44.0
Nitab4.5_0005793g0030 Nicotiana tabacum HOM05D007956 ORTHO05D010152 1.2e-126 458.0 556 48.6
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 7.8e-123 445.3 564 41.5
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 1.5e-121 441.0 570 42.1
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 2.5e-121 440.3 560 42.3
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 3.6e-120 436.4 582 47.3
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 4.7e-120 436.0 568 41.9
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 9.2e-116 421.8 565 39.6
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 3.5e-115 419.9 554 40.8
Nitab4.5_0002347g0140 Nicotiana tabacum HOM05D007956 ORTHO05D010152 7.8e-115 418.7 566 41.7
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 1.3e-114 417.9 557 40.6
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 7.3e-113 412.1 563 40.5
EL10Ac8g19997 Beta vulgaris HOM05D007956 ORTHO05D010152 6.2e-112 409.1 560 40.4
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 4.0e-111 406.4 557 41.8
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 3.4e-110 403.3 567 43.9
HanXRQChr16g0515891 Helianthus annuus HOM05D007956 ORTHO05D010152 2.2e-109 400.6 570 38.8
Ciclev10018367m.g Citrus clementina HOM05D007956 ORTHO05D010152 3.2e-108 396.7 568 43.8
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 2.3e-106 390.6 570 41.2
Lsat_1_v5_gn_4_59081 Lactuca sativa HOM05D007956 ORTHO05D010152 3.0e-106 390.2 575 38.6
Lj1P1226T19 Lonicera japonica HOM05D007956 ORTHO05D010152 2.2e-101 374.0 562 44.1
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 2.9e-101 373.6 570 41.4
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 1.1e-100 371.7 556 44.4
AUR62012653 Chenopodium quinoa HOM05D007956 ORTHO05D010152 2.4e-100 370.5 556 36.7
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 1.2e-99 368.2 555 42.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 7.8e-99 365.5 568 44.2
Peaxi162Scf00427g00116 Petunia axillaris HOM05D007956 ORTHO05D010152 1.1e-97 361.7 572 40.7
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 3.3e-97 360.1 565 40.2
Actinidia05532 Actinidia chinensis HOM05D007956 ORTHO05D010152 1.2e-96 358.2 512 45.9
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 2.6e-94 350.5 555 42.9
Eucgr.E04114 Eucalyptus grandis HOM05D007956 ORTHO05D010152 4.4e-94 349.7 556 40.6
CANSAT56G1376 Cannabis sativa HOM05D007956 ORTHO05D010152 8.4e-93 345.5 559 40.6
Carub.0007s2026 Capsella rubella HOM05D007956 ORTHO05D010152 1.7e-90 337.8 577 33.3
Thhalv10024760m.g Eutrema salsugineum HOM05D007956 ORTHO05D010152 2.3e-90 337.4 577 33.4
AL7G32950 Arabidopsis lyrata HOM05D007956 ORTHO05D010152 3.9e-90 336.7 590 33.4
CARHR227750 Cardamine hirsuta HOM05D007956 ORTHO05D010152 1.5e-89 334.7 591 33.2
AT4G21170 Arabidopsis thaliana HOM05D007956 ORTHO05D010152 1.3e-88 331.6 592 33.6
MBI18_g39550_MAGBIO Magnolia biondii HOM05D007956 ORTHO05D010152 2.4e-87 327.4 577 33.4
Ah.09g235260 Amaranthus hybridus HOM05D007956 ORTHO05D010152 6.9e-87 325.9 443 39.5
Sp7g19250 Schrenkiella parvula HOM05D007956 ORTHO05D010152 5.8e-86 322.8 591 33.7
BcaNung03837 Brassica carinata HOM05D007956 ORTHO05D010152 2.9e-85 320.5 580 33.1
BcaC09g51250 Brassica carinata HOM05D007956 ORTHO05D010152 4.9e-85 319.7 555 34.1
C01p15110 Brassica napus HOM05D007956 ORTHO05D010152 1.1e-84 318.5 555 34.1
BolC1t01460H Brassica oleracea HOM05D007956 ORTHO05D010152 1.1e-84 318.5 555 34.1
BraA01t01197Z Brassica rapa HOM05D007956 ORTHO05D010152 2.4e-84 317.4 571 33.5
THA.LOC104812478 Tarenaya hassleriana HOM05D007956 ORTHO05D010152 3.9e-82 310.1 584 34.4
A01p12520 Brassica napus HOM05D007956 ORTHO05D010152 5.1e-82 309.7 571 32.6
FAN25G3383 Fragaria x ananassa HOM05D007956 ORTHO05D010152 8.1e-80 302.4 561 37.6
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 1.1e-76 292.0 521 38.4
AUR62022001 Chenopodium quinoa HOM05D007956 ORTHO05D010152 1.6e-75 288.1 443 35.9
DCAR_008134 Daucus carota HOM05D007956 ORTHO05D010152 2.1e-75 287.7 369 51.2
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 2.1e-75 287.7 368 41.0
Gohir.D05G171300 Gossypium hirsutum HOM05D007956 ORTHO05D010152 5.3e-71 273.1 364 38.7
Nn1g07048 Nelumbo nucifera HOM05D007956 ORTHO05D010152 6.9e-71 272.7 379 44.1
Aa31LG6G3180 Aethionema arabicum HOM05D007956 ORTHO05D010152 1.8e-66 258.1 559 35.8
Haze_06747 Corylus avellana HOM05D007956 ORTHO05D010152 7.4e-65 252.7 291 44.3
Gohir.A05G168200 Gossypium hirsutum HOM05D007956 ORTHO05D010152 8.2e-64 249.2 341 38.4
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 5.3e-63 246.5 378 46.6
FAN21G4014 Fragaria x ananassa HOM05D007956 ORTHO05D010152 9.0e-63 245.7 458 38.0
FvH4_3g02620 Fragaria vesca HOM05D007956 ORTHO05D010152 2.2e-61 241.1 430 40.5
Atru.chr10.2152 Acer truncatum HOM05D007956 ORTHO05D010152 5.1e-50 203.4 329 37.7
Eucgr.L03252 Eucalyptus grandis HOM05D007956 ORTHO05D010152 3.3e-49 200.7 301 37.5
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 7.0e-47 193.0 179 50.8
Aqoxy1G03672 Aquilegia oxysepala HOM05D007956 ORTHO05D010152 2.5e-44 184.5 429 35.4
HPP92_010087 Vanilla planifolia HOM05D007956 ORTHO05D010152 2.6e-38 164.5 345 29.6
ATR0697G148 Amborella trichopoda HOM05D007956 ORTHO05D010152 9.8e-33 146.0 348 34.5
ATR0751G204 Amborella trichopoda HOM05D007956 ORTHO05D010152 2.1e-27 128.3 254 38.2
QL05p074780 Quercus lobata HOM05D000013 ORTHO05D000011 2.1e-27 128.3 201 38.3
CDE05G3624 Ceratophyllum demersum HOM05D007956 ORTHO05D010152 1.0e-18 99.4 271 26.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.9e-16 91.3 246 26.4
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.0e-13 80.5 198 26.3
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 5.6e-12 77.0 234 25.2
Cfa018449 Carpinus fangiana HOM05D007639 ORTHO05D009509 4.7e-11 73.9 214 29.4
Prupe.1G585600 Prunus persica HOM05D007639 ORTHO05D009509 1.4e-10 72.4 186 29.0
PSO566G0116 Papaver somniferum HOM05D007128 ORTHO05D009059 1.8e-10 72.0 231 26.0
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 1.8e-10 72.0 195 29.2
Haze_06748 Corylus avellana HOM05D007956 ORTHO05D010152 2.3e-10 71.6 218 40.4
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 3.1e-10 71.2 409 18.3
QL09p028535 Quercus lobata HOM05D007639 ORTHO05D009509 3.1e-10 71.2 213 28.2
TAR624G0359 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.0e-10 70.9 77 48.1
Dinv39377 Davidia involucrata HOM05D007639 ORTHO05D009509 5.2e-10 70.5 196 27.6
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.0e-09 68.6 246 25.6
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 2.0e-09 68.6 234 23.5
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 2.0e-09 68.6 395 22.3
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 2.6e-09 68.2 182 28.6
PSO782G4906 Papaver somniferum HOM05D007128 ORTHO05D009059 3.4e-09 67.8 225 26.2
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 5.8e-09 67.0 199 26.6
TAR625G1528 Trochodendron aralioides HOM05D007639 ORTHO05D009509 7.5e-09 66.6 185 25.4
Sabra14G0029300 Salix brachista HOM05D007639 ORTHO05D009509 9.8e-09 66.2 197 29.4
Haze_17619 Corylus avellana HOM05D007639 ORTHO05D009509 1.3e-08 65.9 214 27.6
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.3e-08 65.9 191 26.7
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 1.7e-08 65.5 216 25.0
CiPaw.15G071600 Carya illinoinensis HOM05D007639 ORTHO05D009509 2.9e-08 64.7 191 27.7
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 4.9e-08 63.9 199 24.6
Ah.15g092980 Amaranthus hybridus HOM05D000001 ORTHO05D000003 6.4e-08 63.5 277 20.6
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 6.4e-08 63.5 223 22.9
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 1.1e-07 62.8 165 26.1
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 1.4e-07 62.4 216 24.1
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 1.4e-07 62.4 185 26.5
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 1.4e-07 62.4 188 25.0
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.9e-07 62.0 151 25.8
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.9e-07 62.0 196 24.5
THA.LOC104813851 Tarenaya hassleriana HOM05D007639 ORTHO05D009509 1.9e-07 62.0 180 26.7
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 4.1e-07 60.8 194 23.7
Ciclev10003562m.g Citrus clementina HOM05D007639 ORTHO05D009509 7.0e-07 60.1 187 25.1
Gohir.A02G066400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.0e-07 60.1 254 22.0
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 9.2e-07 59.7 404 18.8
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 9.2e-07 59.7 191 23.6
Gorai.005G081500 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.2e-07 59.7 257 22.6
PSO541G4055 Papaver somniferum HOM05D007639 ORTHO05D009509 9.2e-07 59.7 183 21.9
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 9.2e-07 59.7 412 18.0
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 1.2e-06 59.3 412 18.0
vmacro04826 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 1.6e-06 58.9 190 23.7
vmacro04988 Vaccinium macrocarpon HOM05D007639 ORTHO05D009509 1.6e-06 58.9 190 23.7
Lsat_1_v5_gn_7_74401 Lactuca sativa HOM05D006888 ORTHO05D008371 2.0e-06 58.5 187 24.1
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 2.0e-06 58.5 178 25.8
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 2.7e-06 58.2 215 23.7
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 3.5e-06 57.8 178 21.9
SEGI_23973 Sequoiadendron giganteum HOM05D007063 ORTHO05D008822 3.5e-06 57.8 198 22.2
Aqoxy6G01002 Aquilegia oxysepala HOM05D007639 ORTHO05D009509 6.0e-06 57.0 185 22.7
Eucgr.A00484 Eucalyptus grandis HOM05D007639 ORTHO05D009509 6.0e-06 57.0 210 25.2
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 6.0e-06 57.0 149 25.5
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 7.8e-06 56.6 247 21.5
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 7.8e-06 56.6 146 28.1
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 7.8e-06 56.6 174 25.9


User provided reference genes

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