Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 3.3e-112 408.7 251 100.0
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 3.8e-68 262.3 252 71.0
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 2.9e-60 236.1 252 64.7
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.2e-58 230.7 252 59.5
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 1.4e-51 207.2 255 56.1
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 2.4e-46 189.9 251 58.2
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 7.0e-46 188.3 252 57.5
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 4.5e-45 185.7 188 67.6
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 5.9e-45 185.3 188 67.6
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 5.9e-45 185.3 251 56.6
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 5.9e-45 185.3 252 58.3
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 3.8e-44 182.6 188 67.0
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 6.5e-44 181.8 251 57.0
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 1.2e-42 177.6 184 70.7
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 1.2e-42 177.6 254 51.6
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 2.1e-42 176.8 180 69.4
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 2.7e-42 176.4 252 58.7
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.7e-42 176.4 252 58.3
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.7e-42 176.4 252 58.3
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 4.7e-42 175.6 247 58.7
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 4.7e-42 175.6 252 55.2
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 6.1e-42 175.3 261 49.8
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 3.0e-41 172.9 188 66.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 5.2e-41 172.2 182 64.3
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 8.8e-41 171.4 181 63.5
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 1.5e-40 170.6 256 50.8
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 2.6e-40 169.9 110 79.1
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 3.3e-40 169.5 255 52.5
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 5.7e-40 168.7 181 64.6
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 7.5e-40 168.3 183 63.9
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 9.7e-40 167.9 182 61.0
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.7e-39 167.2 110 79.1
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 1.7e-39 167.2 110 79.1
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.7e-39 167.2 252 52.0
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.2e-39 166.8 252 54.4
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 2.8e-39 166.4 250 51.2
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 3.7e-39 166.0 122 71.3
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 4.8e-39 165.6 120 71.7
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 4.8e-39 165.6 168 65.5
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 4.8e-39 165.6 111 76.6
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 6.3e-39 165.2 110 76.4
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 8.2e-39 164.9 218 57.3
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.1e-38 164.5 256 53.9
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 1.1e-38 164.5 115 73.9
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.4e-38 164.1 111 76.6
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 1.4e-38 164.1 111 76.6
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.8e-38 163.7 108 78.7
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 1.8e-38 163.7 250 56.8
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 3.1e-38 162.9 105 79.0
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 4.1e-38 162.5 119 70.6
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 4.1e-38 162.5 108 77.8
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 5.3e-38 162.2 119 72.3
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 9.1e-38 161.4 248 55.6
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 9.1e-38 161.4 249 55.4
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 9.1e-38 161.4 116 71.6
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.2e-37 161.0 123 68.3
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 1.6e-37 160.6 119 69.7
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 2.7e-37 159.8 259 57.1
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 3.5e-37 159.5 108 75.0
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 4.5e-37 159.1 112 72.3
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 4.5e-37 159.1 108 75.9
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 5.9e-37 158.7 123 66.7
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 5.9e-37 158.7 119 68.9
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 7.7e-37 158.3 121 68.6
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 7.7e-37 158.3 108 78.7
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.0e-36 157.9 108 75.0
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.3e-36 157.5 170 64.1
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.7e-36 157.1 251 51.4
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 2.2e-36 156.8 106 74.5
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 2.9e-36 156.4 111 74.8
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 2.9e-36 156.4 122 67.2
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 3.8e-36 156.0 110 72.7
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 5.0e-36 155.6 252 52.0
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 6.5e-36 155.2 112 69.6
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 8.5e-36 154.8 181 62.4
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.1e-35 154.5 107 72.9
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.1e-35 154.5 111 70.3
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.1e-35 154.5 123 68.3
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.5e-35 154.1 105 75.2
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 1.9e-35 153.7 268 51.1
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.5e-35 153.3 123 67.5
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 4.2e-35 152.5 107 75.7
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 4.2e-35 152.5 256 44.1
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 9.4e-35 151.4 110 71.8
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 9.4e-35 151.4 258 53.5
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 3.6e-34 149.4 111 67.6
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 4.7e-34 149.1 307 44.3
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 4.7e-34 149.1 106 72.6
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 6.1e-34 148.7 111 69.4
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.3e-33 146.7 115 68.7
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 3.0e-33 146.4 116 63.8
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 6.8e-33 145.2 314 43.9
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.2e-32 144.4 124 60.5
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 1.2e-32 144.4 116 65.5
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.2e-32 144.4 116 65.5
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.2e-32 144.4 116 65.5
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 1.2e-32 144.4 116 63.8
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 1.2e-32 144.4 131 61.1
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 1.5e-32 144.1 111 67.6
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.4e-32 142.5 114 64.0
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 7.5e-32 141.7 108 67.6
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 7.5e-32 141.7 108 67.6
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.2e-31 140.2 250 42.8
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 6.3e-31 138.7 257 46.7
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 6.3e-31 138.7 108 63.0
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.3e-31 138.3 108 65.7
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 8.3e-31 138.3 108 65.7
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.1e-30 137.9 109 62.4
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 1.1e-30 137.9 235 53.2
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.8e-30 137.1 108 63.9
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.1e-30 136.3 252 46.8
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 4.1e-30 136.0 106 65.1
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 9.1e-30 134.8 105 65.7
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.6e-29 134.0 112 64.3
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 3.8e-28 129.4 102 67.6
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 5.0e-28 129.0 108 61.1
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.0e-28 129.0 104 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 5.5e-27 125.6 102 61.8
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 5.5e-27 125.6 104 61.5
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 9.4e-27 124.8 104 62.5
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.6e-26 124.0 104 61.5
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.7e-26 123.2 104 67.3
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 3.6e-26 122.9 104 60.6
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 3.6e-26 122.9 104 60.6
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 3.6e-26 122.9 104 60.6
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 3.6e-26 122.9 104 60.6
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 3.6e-26 122.9 104 60.6
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 3.6e-26 122.9 97 61.9
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 6.1e-26 122.1 109 59.6
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 8.0e-26 121.7 104 61.5
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.0e-25 121.3 104 60.6
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.8e-25 120.6 103 57.3
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 3.4e-24 116.3 105 62.9
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.3e-23 114.4 104 57.7
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 3.7e-23 112.8 95 60.0
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.2e-18 97.8 85 60.0
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 8.0e-18 95.1 105 49.5
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 2.6e-16 90.1 125 53.6
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 9.8e-16 88.2 70 67.1
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 2.0e-13 80.5 207 47.3
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 5.0e-12 75.9 207 46.4
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 1.5e-11 74.3 70 65.7
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 1.1e-06 58.2 103 37.9
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 1.1e-06 58.2 103 37.9
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.1e-06 58.2 103 37.9
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 2.4e-06 57.0 102 40.2
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 3.2e-06 56.6 102 37.3
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 3.2e-06 56.6 102 37.3
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 4.1e-06 56.2 103 35.9
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 7.0e-06 55.5 35 77.1


User provided reference genes

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