Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 5.1e-208 728.0 527 100.0
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 2.1e-108 397.1 459 76.7
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 2.8e-89 333.6 430 79.1
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 4.6e-84 316.2 469 60.3
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 4.6e-84 316.2 467 61.5
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 7.9e-84 315.5 468 62.8
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.4e-83 314.7 468 62.2
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.0e-83 313.5 468 62.2
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.8e-80 304.3 455 68.4
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.8e-80 304.3 469 65.7
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 3.4e-79 300.1 468 58.5
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 4.1e-72 276.6 464 63.8
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 2.0e-66 257.7 459 64.3
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 7.5e-66 255.8 461 59.0
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 8.2e-65 252.3 456 60.5
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.4e-64 251.5 198 68.2
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.4e-64 250.8 456 37.7
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 3.1e-64 250.4 466 61.6
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 9.1e-64 248.8 459 58.4
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 8.5e-62 242.3 467 59.3
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 3.2e-61 240.4 463 60.7
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.6e-60 238.0 439 52.2
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.6e-60 238.0 462 51.3
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 3.6e-60 236.9 459 49.5
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 3.6e-60 236.9 471 52.9
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 4.7e-60 236.5 475 57.9
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.5e-58 231.5 456 55.9
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.2e-57 227.6 448 54.0
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 1.2e-55 221.9 448 45.8
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.0e-55 221.1 448 48.7
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 4.5e-55 219.9 465 61.3
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 8.5e-54 215.7 457 54.3
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 8.5e-54 215.7 468 57.5
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 2.5e-53 214.2 456 59.6
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.6e-52 211.5 481 54.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 2.1e-52 211.1 465 57.2
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 1.0e-51 208.8 465 57.8
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.0e-51 208.8 448 44.4
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 4.0e-51 206.8 453 50.1
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 6.8e-51 206.1 457 60.0
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 8.8e-51 205.7 477 57.0
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 8.8e-51 205.7 442 56.8
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 9.8e-50 202.2 436 59.2
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.8e-49 200.7 448 42.2
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.3e-46 191.8 468 53.2
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 3.8e-46 190.3 464 57.5
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 1.9e-45 188.0 340 56.5
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 3.3e-45 187.2 461 54.0
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.6e-44 184.9 451 57.4
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 1.6e-44 184.9 461 53.8
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 8.0e-44 182.6 363 63.4
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.4e-43 181.8 474 57.8
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 1.4e-43 181.8 481 57.6
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 5.2e-43 179.9 464 58.0
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 8.9e-43 179.1 477 56.4
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 2.6e-42 177.6 467 50.1
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 7.5e-42 176.0 454 56.8
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 2.9e-41 174.1 463 58.5
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 3.7e-41 173.7 466 30.7
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 6.4e-41 172.9 464 56.2
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.1e-40 172.2 464 58.2
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 1.4e-40 171.8 464 56.2
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.8e-40 171.4 466 56.2
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 4.1e-40 170.2 479 41.5
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 1.3e-38 165.2 475 55.2
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.3e-38 165.2 451 55.2
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 3.0e-38 164.1 475 54.9
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.5e-37 161.8 455 54.7
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.5e-37 161.8 464 54.1
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 1.9e-37 161.4 466 55.6
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 1.9e-37 161.4 466 55.6
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.2e-36 158.7 466 56.0
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 3.4e-34 150.6 454 53.1
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 3.5e-31 140.6 340 50.0
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 3.1e-27 127.5 338 30.2
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 3.4e-26 124.0 174 42.5
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.6e-23 115.2 211 40.3
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.3e-21 107.5 184 35.9
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.2e-20 105.5 336 46.4
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.5e-10 72.0 155 36.1
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.1e-08 65.9 50 62.0
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 3.5e-07 60.8 62 50.0


User provided reference genes

Program Settings