Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15679 Avicennia marina HOM05D000110 ORTHO05D000024 7.8e-64 246.9 119 100.0
QL06p036418 Quercus lobata HOM05D000110 ORTHO05D000024 1.3e-21 106.7 129 49.6
Oeu017116.1 Olea europaea HOM05D000110 ORTHO05D000024 9.0e-20 100.5 124 46.0
Oeu003808.1 Olea europaea HOM05D000110 ORTHO05D000024 1.0e-18 97.1 122 45.9
Cfa006860 Carpinus fangiana HOM05D000110 ORTHO05D000024 1.7e-18 96.3 129 48.8
TAR628G1459 Trochodendron aralioides HOM05D000110 ORTHO05D000024 5.0e-18 94.7 138 43.5
CiPaw.07G045500 Carya illinoinensis HOM05D000110 ORTHO05D000024 6.5e-18 94.4 136 45.6
Thecc.01G087700 Theobroma cacao HOM05D000110 ORTHO05D000024 6.5e-18 94.4 134 46.3
Duzib147G0402 Durio zibethinus HOM05D000110 ORTHO05D000024 2.5e-17 92.4 135 43.7
Haze_03904 Corylus avellana HOM05D000110 ORTHO05D000024 4.2e-17 91.7 136 45.6
Duzib264G0364 Durio zibethinus HOM05D000110 ORTHO05D000024 9.4e-17 90.5 136 45.6
Migut.K00813 Erythranthe guttata HOM05D000110 ORTHO05D000024 1.2e-16 90.1 149 45.6
Potri.007G058200 Populus trichocarpa HOM05D000110 ORTHO05D000024 1.6e-16 89.7 137 43.8
vmacro13025 Vaccinium macrocarpon HOM05D000110 ORTHO05D000024 2.1e-16 89.4 134 45.5
Oeu012259.1 Olea europaea HOM05D000110 ORTHO05D000024 2.7e-16 89.0 114 50.9
Sabra07G0049800 Salix brachista HOM05D000110 ORTHO05D000024 2.7e-16 89.0 131 42.7
Manes.12G124100 Manihot esculenta HOM05D000110 ORTHO05D000024 3.6e-16 88.6 139 46.0
CiPaw.08G142800 Carya illinoinensis HOM05D000110 ORTHO05D000024 4.6e-16 88.2 137 43.8
Nn5g29820 Nelumbo nucifera HOM05D000110 ORTHO05D000024 4.6e-16 88.2 132 43.9
Duzib187G0586 Durio zibethinus HOM05D000110 ORTHO05D000024 1.4e-15 86.7 135 44.4
Glyma.01G021100 Glycine max HOM05D000110 ORTHO05D000024 1.8e-15 86.3 142 45.1
Manes.13G102100 Manihot esculenta HOM05D000110 ORTHO05D000024 3.9e-15 85.1 123 43.9
CSS0027307 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 1.1e-14 83.6 138 44.9
COL.COLO4_27382 Corchorus olitorius HOM05D000110 ORTHO05D000024 1.1e-14 83.6 141 40.4
Potri.005G149100 Populus trichocarpa HOM05D000110 ORTHO05D000024 1.1e-14 83.6 137 42.3
Actinidia25295 Actinidia chinensis HOM05D000110 ORTHO05D000024 1.5e-14 83.2 129 45.7
TAR376G0133 Trochodendron aralioides HOM05D000110 ORTHO05D000024 3.3e-14 82.0 136 44.1
Nn1g05644 Nelumbo nucifera HOM05D000110 ORTHO05D000024 5.7e-14 81.3 139 41.7
Cpa.g.sc55.3 Carica papaya HOM05D000110 ORTHO05D000024 7.4e-14 80.9 127 39.4
SalBow5G0675 Salvia bowleyana HOM05D000110 ORTHO05D000024 7.4e-14 80.9 119 45.4
GSVIVG01003947001 Vitis vinifera HOM05D000110 ORTHO05D000024 9.7e-14 80.5 135 43.7
TAR256G0006 Trochodendron aralioides HOM05D000110 ORTHO05D000024 1.3e-13 80.1 124 41.1
TWI74G0438 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 1.7e-13 79.7 129 42.6
Gohir.A12G085622 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.2e-13 79.3 139 41.0
Gohir.D12G084001 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.8e-13 79.0 139 41.0
ECA238G2002 Erigeron canadensis HOM05D000110 ORTHO05D000024 3.7e-13 78.6 139 40.3
Lju188C9T6 Lonicera japonica HOM05D000110 ORTHO05D000024 3.7e-13 78.6 118 44.1
Gorai.008G094000 Gossypium raimondii HOM05D000110 ORTHO05D000024 4.8e-13 78.2 139 41.0
Atru.chr3.1211 Acer truncatum HOM05D000110 ORTHO05D000024 6.3e-13 77.8 138 40.6
Oeu032329.1 Olea europaea HOM05D000110 ORTHO05D000024 6.3e-13 77.8 115 46.1
Peaxi162Scf00085g00045 Petunia axillaris HOM05D000110 ORTHO05D000024 6.3e-13 77.8 128 39.1
Nitab4.5_0000402g0110 Nicotiana tabacum HOM05D000110 ORTHO05D000024 8.2e-13 77.4 141 37.6
Glyma.09G201000 Glycine max HOM05D000110 ORTHO05D000024 1.4e-12 76.6 143 39.9
MD15G1309400 Malus domestica HOM05D000110 ORTHO05D000024 1.4e-12 76.6 136 40.4
Phvul.002G144900 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 1.4e-12 76.6 149 38.3
CiPaw.07G045300 Carya illinoinensis HOM05D000110 ORTHO05D000024 2.4e-12 75.9 123 39.8
SalBow3G2356 Salvia bowleyana HOM05D000110 ORTHO05D000024 6.9e-12 74.3 124 44.4
Ciclev10026011m.g Citrus clementina HOM05D000110 ORTHO05D000024 2.0e-11 72.8 135 39.3
TWI53G1823 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 2.0e-11 72.8 135 39.3
HanXRQChr15g0483071 Helianthus annuus HOM05D000110 ORTHO05D000024 4.5e-11 71.6 133 38.3
Lsat_1_v5_gn_3_63100 Lactuca sativa HOM05D000110 ORTHO05D000024 4.5e-11 71.6 123 38.2
Sabra05G0118700 Salix brachista HOM05D000110 ORTHO05D000024 4.5e-11 71.6 137 39.4
Aqoxy6G01482 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 5.9e-11 71.2 145 36.6
unitig_0.g1714 Utricularia gibba HOM05D000110 ORTHO05D000024 1.0e-10 70.5 117 38.5
Actinidia06504 Actinidia chinensis HOM05D000110 ORTHO05D000024 1.3e-10 70.1 116 38.8
Gohir.D03G035200 Gossypium hirsutum HOM05D000110 ORTHO05D000024 1.7e-10 69.7 119 36.1
MD01G1041500 Malus domestica HOM05D000110 ORTHO05D000024 1.7e-10 69.7 149 35.6
FAN19G1051 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.9e-10 68.9 140 35.7
FAN19G2512 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.9e-10 68.9 140 35.7
FAN26G1297 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.9e-10 68.9 140 37.1
Sopen11g005680 Solanum pennellii HOM05D000110 ORTHO05D000024 2.9e-10 68.9 158 34.8
AL8G43180 Arabidopsis lyrata HOM05D000110 ORTHO05D000024 3.8e-10 68.6 121 39.7
CARHR279550 Cardamine hirsuta HOM05D000110 ORTHO05D000024 3.8e-10 68.6 117 37.6
FvH4_1g19310 Fragaria vesca HOM05D000110 ORTHO05D000024 3.8e-10 68.6 140 35.7
Gohir.A02G145500 Gossypium hirsutum HOM05D000110 ORTHO05D000024 3.8e-10 68.6 117 40.2
AT5G65590 Arabidopsis thaliana HOM05D000110 ORTHO05D000024 5.0e-10 68.2 121 39.7
Lsat_1_v5_gn_2_69680 Lactuca sativa HOM05D000110 ORTHO05D000024 5.0e-10 68.2 143 36.4
FAN23G1793 Fragaria x ananassa HOM05D000110 ORTHO05D000024 6.5e-10 67.8 140 35.7
TPR.G28810 Trifolium pratense HOM05D000110 ORTHO05D000024 6.5e-10 67.8 108 42.6
Carub.0008s2643 Capsella rubella HOM05D000110 ORTHO05D000024 8.5e-10 67.4 122 39.3
Cc07_g13810 Coffea canephora HOM05D000110 ORTHO05D000024 8.5e-10 67.4 130 39.2
VMungo1215G0897 Vigna mungo HOM05D000110 ORTHO05D000024 8.5e-10 67.4 136 36.8
Lalb_Chr05g0216231 Lupinus albus HOM05D000110 ORTHO05D000024 1.1e-09 67.0 96 43.8
Prupe.6G205200 Prunus persica HOM05D000110 ORTHO05D000024 1.1e-09 67.0 153 33.3
CAN.G1813.3 Capsicum annuum HOM05D000110 ORTHO05D000024 1.4e-09 66.6 155 32.3
RcHm_v2.0_Chr2g0110671 Rosa chinensis HOM05D000110 ORTHO05D000024 1.4e-09 66.6 140 35.7
THA.LOC104798599 Tarenaya hassleriana HOM05D000110 ORTHO05D000024 1.4e-09 66.6 124 34.7
Sed0026828 Sechium edule HOM05D000110 ORTHO05D000024 1.9e-09 66.2 136 36.8
MBI16_g30307_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 2.5e-09 65.9 100 45.0
Peaxi162Scf01414g00012 Petunia axillaris HOM05D000110 ORTHO05D000024 2.5e-09 65.9 131 37.4
Gorai.003G036800 Gossypium raimondii HOM05D000110 ORTHO05D000024 3.2e-09 65.5 114 35.1
VMungo0251G0462 Vigna mungo HOM05D000110 ORTHO05D000024 4.2e-09 65.1 139 35.3
Lsat_1_v5_gn_4_76221 Lactuca sativa HOM05D000110 ORTHO05D000024 5.5e-09 64.7 145 35.9
Lalb_Chr09g0325891 Lupinus albus HOM05D000110 ORTHO05D000024 5.5e-09 64.7 91 44.0
Lj2P526T11 Lonicera japonica HOM05D000110 ORTHO05D000024 7.2e-09 64.3 130 40.0
Phvul.003G287600 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 7.2e-09 64.3 129 33.3
Dinv27015 Davidia involucrata HOM05D000110 ORTHO05D000024 1.2e-08 63.5 120 40.0
FAN28G0586 Fragaria x ananassa HOM05D000110 ORTHO05D000024 1.6e-08 63.2 140 35.0
HanXRQChr14g0444571 Helianthus annuus HOM05D000110 ORTHO05D000024 1.6e-08 63.2 112 38.4
Solyc11g010940.2 Solanum lycopersicum HOM05D000110 ORTHO05D000024 2.1e-08 62.8 156 35.9
ClCG10G008290 Citrullus lanatus HOM05D000110 ORTHO05D000024 2.7e-08 62.4 123 38.2
PGSC0003DMG400016116 Solanum tuberosum HOM05D000110 ORTHO05D000024 2.7e-08 62.4 161 34.8
Psat2g102080 Pisum sativum HOM05D000110 ORTHO05D000024 3.6e-08 62.0 107 37.4
TWI77G0751 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 4.7e-08 61.6 128 38.3
Eucgr.I00569 Eucalyptus grandis HOM05D000110 ORTHO05D000024 1.0e-07 60.5 108 38.9
Lj2g0019654 Lotus japonicus HOM05D000110 ORTHO05D000024 1.0e-07 60.5 132 35.6
CDE07G0686 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 1.4e-07 60.1 132 36.4
PGR031G3216 Punica granatum HOM05D000110 ORTHO05D000024 1.4e-07 60.1 123 35.0
Ca_22626_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 1.8e-07 59.7 115 36.5
Medtr5g031440 Medicago truncatula HOM05D000110 ORTHO05D000024 1.8e-07 59.7 116 35.3
unitig_0.g2649 Utricularia gibba HOM05D000110 ORTHO05D000024 1.8e-07 59.7 96 37.5
unitig_748.g7034 Utricularia gibba HOM05D000110 ORTHO05D000024 3.0e-07 58.9 120 37.5
ClCG01G018270 Citrullus lanatus HOM05D000110 ORTHO05D000024 1.5e-06 56.6 136 32.4
Lalb_Chr16g0381561 Lupinus albus HOM05D000110 ORTHO05D000024 2.0e-06 56.2 101 39.6
SGA_v2.0_scaffold45G17222 Striga asiatica HOM05D000110 ORTHO05D000024 2.0e-06 56.2 104 39.4
A06p32420 Brassica napus HOM05D000110 ORTHO05D000024 3.3e-06 55.5 117 35.9
C03p60190 Brassica napus HOM05D000110 ORTHO05D000024 3.3e-06 55.5 117 35.9
BolC3t18281H Brassica oleracea HOM05D000110 ORTHO05D000024 3.3e-06 55.5 117 35.9
BraA06t26167Z Brassica rapa HOM05D000110 ORTHO05D000024 3.3e-06 55.5 117 35.9
Sed0006950 Sechium edule HOM05D000110 ORTHO05D000024 5.7e-06 54.7 135 31.1
HanXRQChr09g0259531 Helianthus annuus HOM05D000110 ORTHO05D000024 7.4e-06 54.3 145 31.7
BcaB04g20022 Brassica carinata HOM05D000110 ORTHO05D000024 9.7e-06 53.9 111 34.2


User provided reference genes

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