Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 2.9e-58 228.4 118 100.0
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 2.4e-28 129.0 95 69.5
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.4e-25 119.8 96 66.7
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 1.3e-23 113.2 99 64.6
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 1.2e-19 100.1 99 56.6
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 6.4e-18 94.4 99 52.5
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.9e-17 92.8 95 55.8
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 2.7e-16 89.0 97 52.6
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 4.6e-16 88.2 101 54.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 6.0e-16 87.8 85 54.1
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 7.9e-16 87.4 108 48.1
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.0e-15 87.0 103 46.6
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.3e-15 86.7 96 49.0
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.8e-15 86.3 91 49.5
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.8e-15 86.3 103 50.5
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.3e-15 85.9 97 52.6
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 3.9e-15 85.1 96 49.0
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 6.7e-15 84.3 88 47.7
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.7e-15 84.0 97 46.4
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 8.7e-15 84.0 107 47.7
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 8.7e-15 84.0 67 59.7
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.1e-14 83.6 93 50.5
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.5e-14 83.2 73 58.9
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.9e-14 82.8 91 51.6
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 2.5e-14 82.4 93 43.0
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 3.3e-14 82.0 114 43.0
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 3.3e-14 82.0 92 55.4
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 3.3e-14 82.0 74 50.0
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 5.6e-14 81.3 94 46.8
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 5.6e-14 81.3 95 46.3
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 7.4e-14 80.9 72 52.8
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 9.6e-14 80.5 110 46.4
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 9.6e-14 80.5 98 46.9
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.3e-13 80.1 87 48.3
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.8e-13 79.0 92 52.2
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 6.2e-13 77.8 85 47.1
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 6.2e-13 77.8 98 45.9
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 6.2e-13 77.8 76 50.0
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 8.1e-13 77.4 92 46.7
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 8.1e-13 77.4 76 48.7
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 8.1e-13 77.4 95 45.3
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 2.4e-12 75.9 96 46.9
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.4e-12 75.9 70 54.3
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 4.0e-12 75.1 106 42.5
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 5.3e-12 74.7 70 48.6
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.3e-12 74.7 91 42.9
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 5.3e-12 74.7 67 53.7
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 6.9e-12 74.3 68 50.0
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.9e-12 74.3 84 46.4
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.9e-12 74.3 87 46.0
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 9.0e-12 73.9 96 46.9
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 9.0e-12 73.9 109 39.4
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.2e-11 73.6 87 46.0
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.2e-11 73.6 106 41.5
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 1.5e-11 73.2 93 50.5
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.5e-11 73.2 68 52.9
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.5e-11 73.2 91 47.3
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.5e-11 73.2 91 47.3
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.5e-11 73.2 100 45.0
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.0e-11 72.8 70 45.7
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 2.6e-11 72.4 93 43.0
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 2.6e-11 72.4 93 43.0
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.6e-11 72.4 93 46.2
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.4e-11 72.0 92 48.9
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.4e-11 72.0 92 48.9
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 4.5e-11 71.6 92 48.9
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 5.8e-11 71.2 101 41.6
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 7.6e-11 70.9 76 46.1
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 9.9e-11 70.5 69 53.6
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 9.9e-11 70.5 71 50.7
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.3e-10 70.1 75 46.7
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.3e-10 70.1 97 44.3
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.7e-10 69.7 103 40.8
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.7e-10 69.7 103 40.8
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.7e-10 69.7 103 40.8
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 2.2e-10 69.3 70 47.1
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 3.8e-10 68.6 78 47.4
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 4.9e-10 68.2 73 47.9
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 4.9e-10 68.2 99 41.4
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 4.9e-10 68.2 70 44.3
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 6.4e-10 67.8 99 40.4
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 6.4e-10 67.8 99 40.4
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 6.4e-10 67.8 99 41.4
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 6.4e-10 67.8 93 44.1
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 8.4e-10 67.4 78 44.9
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 8.4e-10 67.4 73 47.9
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 8.4e-10 67.4 61 55.7
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.4e-09 66.6 103 39.8
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.4e-09 66.6 82 45.1
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.4e-09 66.6 103 39.8
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.4e-09 66.6 90 40.0
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.9e-09 66.2 98 39.8
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.9e-09 66.2 87 42.5
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.9e-09 66.2 105 39.0
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.4e-09 65.9 92 40.2
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 3.2e-09 65.5 67 49.3
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 4.2e-09 65.1 77 41.6
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 4.2e-09 65.1 70 48.6
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 5.5e-09 64.7 92 43.5
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 7.1e-09 64.3 96 40.6
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 7.1e-09 64.3 96 39.6
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 7.1e-09 64.3 104 37.5
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 9.3e-09 63.9 82 42.7
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.2e-08 63.5 63 50.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 1.6e-08 63.2 98 41.8
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.1e-08 62.8 85 36.5
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 2.1e-08 62.8 83 42.2
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.7e-08 62.4 92 37.0
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.7e-08 62.4 87 41.4
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 3.5e-08 62.0 67 41.8
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.6e-08 61.6 81 43.2
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 6.0e-08 61.2 67 43.3
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 6.0e-08 61.2 72 43.1
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.0e-08 61.2 67 41.8
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.0e-07 60.5 93 36.6
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.8e-07 59.7 78 37.2
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.3e-07 59.3 78 41.0
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 2.5e-06 55.8 91 37.4
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 3.3e-06 55.5 80 36.2
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 5.6e-06 54.7 91 36.3
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 7.4e-06 54.3 64 46.9
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 9.6e-06 53.9 70 41.4
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 9.6e-06 53.9 70 41.4
GSVIVG01001909001 Vitis vinifera HOM05D000258 ORTHO05D000153 9.6e-06 53.9 45 62.2


User provided reference genes

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