Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 1.9e-92 342.4 162 100.0
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 3.3e-73 278.5 161 81.4
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 4.9e-69 264.6 161 75.8
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 2.1e-67 259.2 161 73.3
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 6.7e-66 254.2 161 75.2
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 8.7e-66 253.8 161 72.0
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 7.4e-65 250.8 161 70.8
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 1.3e-64 250.0 161 70.8
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.6e-64 249.6 161 71.4
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 2.8e-64 248.8 161 69.6
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 4.8e-64 248.1 161 70.8
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 4.8e-64 248.1 163 69.9
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 8.1e-64 247.3 161 70.2
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 8.1e-64 247.3 161 70.8
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 1.1e-63 246.9 161 70.2
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 4.0e-63 245.0 161 70.2
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 5.3e-63 244.6 161 70.2
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 3.4e-62 241.9 161 69.6
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 7.6e-62 240.7 161 67.1
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 1.0e-61 240.4 162 69.1
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 1.0e-61 240.4 162 69.8
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 1.7e-61 239.6 161 65.2
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.9e-61 238.8 163 69.3
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 3.8e-61 238.4 161 67.7
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 3.8e-61 238.4 164 66.5
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 4.9e-61 238.0 164 66.5
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 8.4e-61 237.3 161 66.5
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 1.1e-60 236.9 161 65.2
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 1.1e-60 236.9 161 66.5
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 1.4e-60 236.5 161 65.2
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 1.4e-60 236.5 161 66.5
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 1.4e-60 236.5 159 71.1
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.9e-60 236.1 145 74.5
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.9e-60 236.1 164 65.9
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 2.5e-60 235.7 161 65.2
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 3.2e-60 235.3 161 64.6
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 3.2e-60 235.3 161 65.2
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 3.2e-60 235.3 161 67.1
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 4.2e-60 235.0 161 65.8
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 4.2e-60 235.0 161 64.6
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 5.5e-60 234.6 161 64.6
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 5.5e-60 234.6 161 64.6
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 5.5e-60 234.6 161 65.2
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 7.1e-60 234.2 161 64.6
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 7.1e-60 234.2 161 64.6
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 9.3e-60 233.8 161 62.7
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 1.2e-59 233.4 161 66.5
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 1.6e-59 233.0 161 63.4
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 1.6e-59 233.0 161 64.6
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.0e-58 230.3 161 64.0
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 1.8e-58 229.6 161 64.6
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 5.1e-58 228.0 159 68.6
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 5.1e-58 228.0 159 68.6
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 6.7e-58 227.6 161 64.6
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 6.7e-58 227.6 161 62.7
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.1e-57 226.9 161 62.1
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 1.1e-57 226.9 161 60.9
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 1.5e-57 226.5 161 64.6
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 2.5e-57 225.7 162 62.3
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 2.5e-57 225.7 156 64.1
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 7.4e-57 224.2 165 63.6
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 2.1e-56 222.6 161 63.4
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 1.4e-55 219.9 163 62.6
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 6.9e-55 217.6 156 59.6
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 9.0e-55 217.2 156 59.0
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 1.2e-54 216.9 156 59.0
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 1.2e-54 216.9 156 59.0
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 1.2e-54 216.9 164 62.8
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.0e-54 216.1 161 56.5
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 2.6e-54 215.7 164 62.8
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 3.4e-54 215.3 156 59.0
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 3.4e-54 215.3 156 58.3
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 3.4e-54 215.3 141 71.6
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 7.6e-54 214.2 146 66.4
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 7.6e-54 214.2 156 57.1
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 2.2e-53 212.6 161 54.7
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 2.2e-53 212.6 156 57.7
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 2.9e-53 212.2 161 57.8
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 3.2e-52 208.8 164 58.5
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 9.3e-52 207.2 161 53.4
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.6e-51 206.5 144 62.5
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 3.5e-51 205.3 168 60.1
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 6.1e-51 204.5 161 60.9
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.8e-50 203.0 141 68.1
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 2.3e-50 202.6 162 58.6
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 2.3e-50 202.6 162 58.6
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 3.3e-49 198.7 161 57.8
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 1.3e-48 196.8 128 71.9
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 2.2e-45 186.0 148 57.4
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.9e-45 185.7 144 53.5
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 6.5e-45 184.5 134 61.2
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 1.1e-44 183.7 168 53.0
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 1.8e-42 176.4 164 49.4
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.9e-42 175.3 120 66.7
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 3.9e-42 175.3 173 48.6
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 9.7e-41 170.6 173 48.0
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.4e-39 166.8 171 46.2
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.4e-39 166.8 171 46.2
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 2.2e-37 159.5 104 66.3
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 3.8e-37 158.7 145 53.8
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 8.5e-37 157.5 104 65.4
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 8.8e-34 147.5 170 44.7
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.0e-33 146.4 145 51.0
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 2.4e-31 139.4 156 42.9
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 2.2e-29 132.9 168 38.7
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 5.7e-25 118.2 79 67.1
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 1.4e-23 113.6 119 45.4
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 7.0e-23 111.3 105 50.5
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 2.2e-21 106.3 79 54.4
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 3.0e-18 95.9 149 37.6
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 6.3e-16 88.2 164 29.9
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 8.3e-16 87.8 101 38.6
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 4.5e-14 82.0 54 59.3
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 3.0e-10 69.3 147 29.3


User provided reference genes

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