Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.8e-73 278.5 138 100.0
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 4.2e-45 184.9 118 77.1
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 7.5e-42 174.1 134 61.2
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.3e-41 173.3 114 71.9
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.8e-41 172.2 109 70.6
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 4.8e-41 171.4 165 54.5
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 4.8e-41 171.4 110 70.0
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.4e-40 169.9 110 70.0
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 2.4e-40 169.1 110 67.3
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 3.1e-40 168.7 105 71.4
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.1e-40 168.7 111 68.5
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 4.1e-40 168.3 114 67.5
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 4.1e-40 168.3 132 60.6
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 4.1e-40 168.3 107 71.0
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 5.4e-40 167.9 108 68.5
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 7.0e-40 167.5 102 73.5
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 7.0e-40 167.5 107 71.0
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 7.0e-40 167.5 135 59.3
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.2e-39 166.8 104 72.1
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 1.2e-39 166.8 104 74.0
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.6e-39 166.4 110 68.2
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.6e-39 166.4 111 71.2
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 2.0e-39 166.0 103 72.8
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 2.7e-39 165.6 107 71.0
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 4.5e-39 164.9 113 66.4
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.5e-39 164.9 104 71.2
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.5e-39 164.9 104 71.2
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 4.5e-39 164.9 104 71.2
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 5.9e-39 164.5 110 70.0
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 7.7e-39 164.1 114 68.4
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 7.7e-39 164.1 132 59.8
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 7.7e-39 164.1 110 64.5
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 7.7e-39 164.1 111 68.5
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.0e-38 163.7 114 68.4
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.3e-38 163.3 107 69.2
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.2e-38 162.5 105 70.5
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 3.8e-38 161.8 112 65.2
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 3.8e-38 161.8 105 69.5
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.0e-38 161.4 128 61.7
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 5.0e-38 161.4 133 58.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 8.5e-38 160.6 108 69.4
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 8.5e-38 160.6 112 64.3
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 8.5e-38 160.6 112 64.3
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 8.5e-38 160.6 128 60.9
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 8.5e-38 160.6 109 67.0
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 8.5e-38 160.6 105 69.5
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.1e-37 160.2 105 67.6
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 1.1e-37 160.2 107 69.2
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 1.9e-37 159.5 105 68.6
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.9e-37 159.5 109 67.9
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 2.5e-37 159.1 103 69.9
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 3.2e-37 158.7 108 66.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 4.2e-37 158.3 105 65.7
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 4.2e-37 158.3 101 69.3
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 5.5e-37 157.9 113 62.8
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 5.5e-37 157.9 112 63.4
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 5.5e-37 157.9 110 64.5
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 5.5e-37 157.9 108 64.8
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 7.2e-37 157.5 110 65.5
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 7.2e-37 157.5 111 64.9
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 7.2e-37 157.5 102 68.6
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 7.2e-37 157.5 109 67.0
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 9.4e-37 157.1 109 66.1
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 9.4e-37 157.1 111 64.0
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 9.4e-37 157.1 107 68.2
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 9.4e-37 157.1 111 64.0
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 2.1e-36 156.0 111 64.0
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 2.7e-36 155.6 111 63.1
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 3.6e-36 155.2 109 64.2
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 3.6e-36 155.2 112 67.0
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 3.6e-36 155.2 109 64.2
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 4.7e-36 154.8 111 63.1
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 4.7e-36 154.8 107 67.3
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 8.0e-36 154.1 109 64.2
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 8.0e-36 154.1 116 62.9
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.0e-35 153.7 103 68.0
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 1.0e-35 153.7 109 66.1
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.3e-35 152.5 101 68.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 3.0e-35 152.1 103 66.0
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 3.0e-35 152.1 105 63.8
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 5.2e-35 151.4 105 63.8
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 6.8e-35 151.0 101 66.3
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 8.8e-35 150.6 109 62.4
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.5e-34 149.8 101 68.3
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 5.7e-34 147.9 111 58.6
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 2.8e-33 145.6 105 62.9
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 3.7e-33 145.2 87 72.4
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 4.9e-33 144.8 101 64.4
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 4.9e-33 144.8 101 64.4
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 1.1e-32 143.7 101 58.4
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.1e-32 143.7 92 72.8
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 1.8e-32 142.9 107 58.9
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.8e-32 142.9 87 72.4
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 5.4e-32 141.4 111 55.9
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 7.0e-32 141.0 87 71.3
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.6e-31 139.8 110 57.3
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.6e-31 139.8 103 61.2
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 4.5e-31 138.3 88 70.5
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.7e-30 136.3 141 48.2
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 2.9e-30 135.6 87 67.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.5e-29 133.3 92 65.2
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.9e-29 132.9 101 55.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.4e-27 126.7 108 50.0
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.7e-23 112.5 102 52.0
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 5.0e-22 108.2 107 50.5
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.9e-21 106.3 94 52.1
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 5.6e-21 104.8 73 63.0
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 3.6e-20 102.1 95 49.5
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 5.2e-19 98.2 71 60.6
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 5.8e-18 94.7 64 64.1
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.1e-16 90.5 71 59.2
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.2e-16 89.0 66 60.6
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.2e-15 87.0 65 56.9
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.3e-14 83.6 53 66.0
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 3.0e-14 82.4 94 41.5
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 6.2e-12 74.7 41 80.5
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.1e-11 72.4 38 78.9
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 4.4e-10 68.6 41 73.2


User provided reference genes

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