Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 0.0e+00 1460.3 741 100.0
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.1e-268 929.1 751 68.6
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 4.3e-261 904.8 757 65.8
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 3.1e-243 845.5 771 60.4
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 5.1e-230 801.6 769 59.6
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.7e-223 779.2 766 58.7
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 2.4e-219 766.1 657 61.5
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 6.5e-217 758.1 760 57.4
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 6.5e-217 758.1 772 57.3
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.1e-211 740.7 817 54.7
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 5.3e-211 738.4 753 55.2
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 5.0e-209 731.9 763 54.4
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 6.5e-209 731.5 693 58.4
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 4.7e-207 725.3 765 55.7
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.8e-206 723.4 768 53.6
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 4.0e-206 722.2 766 53.4
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.6e-202 710.3 769 54.6
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 2.5e-200 703.0 700 58.1
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 5.5e-200 701.8 609 62.2
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 7.2e-200 701.4 775 53.0
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 8.8e-198 694.5 759 52.6
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.5e-197 693.7 698 57.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.6e-197 693.0 717 54.7
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 3.7e-196 689.1 717 54.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 8.3e-196 688.0 775 53.5
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.6e-194 683.7 689 56.2
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.6e-194 683.7 767 52.0
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 5.9e-194 681.8 766 53.7
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.3e-193 680.6 696 56.3
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.7e-193 680.2 753 53.4
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.7e-193 680.2 750 53.6
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 3.8e-193 679.1 784 51.9
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 6.5e-193 678.3 767 51.8
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 8.5e-193 677.9 761 51.6
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 8.5e-193 677.9 711 53.7
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 3.2e-192 676.0 768 52.2
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 3.2e-192 676.0 691 54.7
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.7e-191 672.9 773 51.6
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 6.1e-191 671.8 710 54.1
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 8.0e-191 671.4 704 54.1
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.0e-190 671.0 704 54.7
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.0e-190 669.1 650 56.6
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 6.8e-190 668.3 687 55.3
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.8e-190 667.9 770 51.4
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.2e-189 667.5 699 54.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.5e-189 667.2 756 52.0
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 3.4e-189 666.0 753 52.5
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 7.5e-189 664.8 763 53.3
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.7e-188 663.7 652 57.4
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.8e-188 662.9 761 51.2
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.4e-187 660.6 641 55.9
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 2.9e-185 652.9 772 50.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.1e-184 651.0 607 57.7
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 5.6e-184 648.7 757 50.7
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 7.3e-184 648.3 745 51.9
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 9.5e-184 647.9 803 49.2
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 9.5e-184 647.9 725 51.7
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 3.6e-183 646.0 762 49.9
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 3.6e-183 646.0 767 50.7
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 8.9e-182 641.3 641 56.3
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.4e-181 639.4 765 51.0
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 2.2e-180 636.7 793 48.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.4e-179 634.0 687 52.7
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.4e-179 634.0 691 52.7
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.6e-178 630.6 653 53.4
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.0e-178 630.2 770 50.3
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 6.4e-172 608.6 774 48.2
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.9e-171 607.1 775 48.5
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 3.2e-171 606.3 782 48.7
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 2.0e-170 603.6 625 54.4
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 2.7e-170 603.2 777 48.3
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.0e-169 601.3 579 55.8
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.7e-169 600.5 760 48.0
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 6.6e-169 598.6 776 48.3
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 1.9e-168 597.0 756 48.1
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.7e-167 592.4 475 64.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.1e-166 591.3 776 47.6
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 6.8e-166 588.6 639 52.3
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 9.8e-165 584.7 745 47.9
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 2.2e-164 583.6 600 54.8
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 3.2e-163 579.7 747 47.5
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 7.1e-163 578.6 771 46.7
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 9.2e-163 578.2 656 50.9
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 5.1e-161 572.4 772 46.4
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 6.6e-161 572.0 641 50.2
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 1.6e-159 567.4 763 45.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.4e-158 564.3 655 50.2
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.8e-158 563.9 759 45.2
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 3.1e-158 563.1 655 50.2
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 3.4e-157 559.7 768 45.8
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.3e-153 547.7 705 45.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 8.9e-150 535.0 698 45.1
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.4e-141 506.5 483 56.7
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-127 461.5 490 53.1
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.8e-126 457.6 419 58.0
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.8e-126 457.6 838 39.1
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.1e-118 430.3 551 48.8
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.3e-113 414.8 629 40.2
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 5.7e-112 409.5 646 40.7
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.4e-110 404.8 709 42.7
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 2.6e-101 374.0 790 35.6
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 7.7e-101 372.5 600 43.2
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 9.7e-96 355.5 476 45.6
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 8.2e-95 352.4 413 46.2
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.6e-77 295.0 385 49.4
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.7e-71 275.0 936 28.3
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 1.3e-63 248.8 649 31.4
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.3e-55 222.2 225 58.2
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.9e-55 221.1 432 38.2
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 7.5e-48 196.4 329 38.9
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.6e-42 177.6 254 43.7
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 3.8e-39 167.5 203 49.3
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 2.3e-36 158.3 559 25.9
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 3.4e-32 144.4 245 43.7
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.2e-29 136.0 624 22.6
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 2.1e-29 135.2 143 52.4
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.0e-28 131.3 121 57.0
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 4.8e-26 124.0 199 42.2
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 3.5e-21 107.8 94 61.7
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 3.0e-20 104.8 143 46.2
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 3.3e-19 101.3 92 63.0
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 6.9e-17 93.6 105 51.4
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 7.6e-16 90.1 73 65.8
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.4e-14 85.1 168 30.4
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.0e-12 79.7 102 51.0
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 5.6e-11 73.9 109 39.4
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 7.4e-11 73.6 115 46.1
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.5e-07 60.5 60 41.7
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 8.4e-07 60.1 60 41.7
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 2.5e-06 58.5 60 40.0
MSTRG.7331 Avicennia marina HOM05D000463 ORTHO05D001294 3.2e-06 58.2 60 40.0
BcaC02g09982 Brassica carinata HOM05D000463 ORTHO05D004638 7.1e-06 57.0 144 27.8
BolC4t24998H Brassica oleracea HOM05D000463 ORTHO05D004638 7.1e-06 57.0 144 27.8
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 7.1e-06 57.0 60 38.3
SalBow1G2888 Salvia bowleyana HOM05D006352 ORTHO05D009628 7.1e-06 57.0 43 67.4
Peaxi162Scf00000g04012 Petunia axillaris HOM05D000463 ORTHO05D001294 9.3e-06 56.6 85 35.3


User provided reference genes

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