Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 4.0e-105 384.8 197 100.0
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 3.6e-66 255.4 182 73.6
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 4.0e-57 225.3 182 64.8
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 2.8e-50 202.6 183 62.8
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 1.4e-49 200.3 186 59.7
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 1.8e-41 173.3 184 54.9
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 1.3e-39 167.2 191 54.5
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 1.3e-39 167.2 187 52.9
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.6e-37 160.2 189 50.3
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 1.8e-36 156.8 174 54.0
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 1.1e-35 154.1 186 51.6
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 2.5e-35 152.9 177 49.7
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 9.7e-35 151.0 182 50.5
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 1.3e-34 150.6 187 47.1
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 1.6e-34 150.2 187 52.4
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 6.3e-34 148.3 181 48.6
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.4e-33 147.1 171 50.3
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 1.4e-33 147.1 178 50.0
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 1.4e-33 147.1 176 52.3
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 2.4e-33 146.4 186 50.0
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 1.5e-32 143.7 181 44.8
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.5e-32 143.7 177 50.3
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 2.0e-32 143.3 185 48.1
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 7.7e-32 141.4 187 50.3
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 1.3e-31 140.6 175 48.0
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 3.8e-31 139.0 180 47.8
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 5.0e-31 138.7 186 47.8
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 1.1e-30 137.5 179 46.4
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 2.5e-30 136.3 179 46.4
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 2.5e-30 136.3 187 43.3
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.2e-30 135.6 180 46.7
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 5.5e-30 135.2 180 50.6
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 7.2e-30 134.8 177 46.3
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 7.2e-30 134.8 175 46.3
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 9.4e-30 134.4 178 48.3
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 1.2e-29 134.0 180 45.0
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.6e-29 133.7 173 48.0
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 2.1e-29 133.3 183 48.6
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 2.1e-29 133.3 181 45.3
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 2.7e-29 132.9 174 46.6
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 3.6e-29 132.5 185 48.1
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 4.6e-29 132.1 181 44.2
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 7.9e-29 131.3 180 45.6
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.0e-28 131.0 181 48.1
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.4e-28 130.6 184 42.9
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 2.3e-28 129.8 173 48.0
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 3.0e-28 129.4 176 46.6
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.0e-28 129.4 186 45.7
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 3.9e-28 129.0 188 45.2
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 3.9e-28 129.0 183 46.4
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 5.1e-28 128.6 175 47.4
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 5.1e-28 128.6 183 46.4
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 5.1e-28 128.6 174 46.0
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 8.8e-28 127.9 175 45.7
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 8.8e-28 127.9 173 48.6
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 1.5e-27 127.1 175 45.7
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.5e-27 127.1 178 43.8
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 2.0e-27 126.7 175 45.7
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 3.3e-27 125.9 180 48.3
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 4.3e-27 125.6 174 46.0
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 4.3e-27 125.6 183 42.1
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 4.3e-27 125.6 183 42.6
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 7.4e-27 124.8 175 45.1
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 7.4e-27 124.8 175 46.9
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 7.4e-27 124.8 175 45.1
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 1.7e-26 123.6 177 42.4
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 2.2e-26 123.2 175 44.0
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 2.2e-26 123.2 175 44.0
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 2.8e-26 122.9 180 45.0
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 2.8e-26 122.9 175 44.6
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 3.7e-26 122.5 176 45.5
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 3.7e-26 122.5 180 43.3
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.1e-25 120.9 188 43.1
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.4e-25 120.6 173 42.2
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 4.1e-25 119.0 173 43.9
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 4.1e-25 119.0 164 45.1
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 5.3e-25 118.6 186 45.2
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 6.9e-25 118.2 187 42.2
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 6.9e-25 118.2 173 45.7
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 1.2e-24 117.5 174 42.0
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.2e-24 117.5 181 40.3
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 2.6e-24 116.3 179 41.3
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.6e-24 116.3 210 39.0
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 4.5e-24 115.5 175 42.9
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 7.7e-24 114.8 175 43.4
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 1.0e-23 114.4 174 44.8
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 2.2e-23 113.2 173 40.5
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 2.9e-23 112.8 174 40.8
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 5.0e-23 112.1 180 41.1
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 1.1e-22 110.9 183 41.5
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 1.4e-22 110.5 176 43.8
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 5.5e-22 108.6 175 42.3
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 9.4e-22 107.8 188 39.9
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 9.4e-22 107.8 179 39.1
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.6e-21 107.1 179 39.7
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 1.6e-21 107.1 173 43.4
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 2.1e-21 106.7 178 39.3
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.6e-21 105.9 188 39.9
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 3.0e-20 102.8 190 37.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 3.0e-20 102.8 181 40.9
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 3.9e-20 102.4 174 39.1
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 6.7e-20 101.7 181 38.1
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 6.7e-20 101.7 175 40.0
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 6.7e-20 101.7 214 34.1
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 8.8e-20 101.3 190 40.0
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.5e-19 100.5 190 40.0
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 2.0e-19 100.1 206 36.4
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.0e-19 100.1 190 40.0
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 3.3e-19 99.4 175 36.0
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 7.4e-19 98.2 169 35.5
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 2.8e-18 96.3 175 34.9
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 4.8e-18 95.5 179 34.6
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 1.4e-17 94.0 186 38.2
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 7.0e-17 91.7 173 34.1
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 7.0e-17 91.7 182 36.3
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.5e-16 90.5 136 46.3
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 7.7e-16 88.2 164 36.0
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 1.3e-15 87.4 179 36.3
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 1.3e-15 87.4 163 35.0
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 9.4e-14 81.3 131 42.0
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 1.6e-13 80.5 175 36.0
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 5.2e-12 75.5 93 45.2
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 6.7e-12 75.1 130 43.8
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 2.0e-11 73.6 87 49.4
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 3.7e-10 69.3 136 39.7
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.1e-09 67.8 52 61.5
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 1.4e-09 67.4 152 33.6
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 2.0e-08 63.5 54 64.8
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 4.5e-08 62.4 181 29.8
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 5.9e-08 62.0 54 53.7
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 1.0e-07 61.2 172 29.1
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.7e-07 60.5 105 36.2
Nn8g38687 Nelumbo nucifera HOM05D046178 ORTHO05D006426 2.5e-06 56.6 66 51.5
DCAR_022257 Daucus carota HOM05D001346 ORTHO05D006426 4.2e-06 55.8 50 54.0


User provided reference genes

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