Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.5e-86 322.8 154 100.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 3.7e-50 201.8 146 68.5
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.6e-45 186.4 135 65.9
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 2.1e-45 186.0 120 74.2
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 2.6e-43 179.1 144 64.6
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.7e-42 176.4 127 63.8
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 6.4e-42 174.5 138 61.6
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.9e-41 172.9 123 67.5
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.1e-41 171.0 120 65.8
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 7.1e-41 171.0 116 69.0
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.6e-40 169.9 123 65.9
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.1e-40 169.5 128 64.8
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 2.1e-40 169.5 138 65.9
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.7e-40 169.1 121 67.8
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.0e-40 167.9 127 59.8
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.0e-39 167.2 123 66.7
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.7e-39 166.4 132 62.9
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 3.0e-39 165.6 121 66.9
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.1e-38 163.7 117 65.8
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.9e-38 162.9 120 65.0
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.9e-38 162.9 127 61.4
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.5e-38 162.5 120 65.0
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 4.3e-38 161.8 104 72.1
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 9.5e-38 160.6 119 66.4
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.2e-37 160.2 120 64.2
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.6e-37 159.8 126 63.5
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.1e-37 159.5 118 67.8
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.1e-37 159.5 116 66.4
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 3.6e-37 158.7 120 63.3
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 6.2e-37 157.9 102 72.5
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.1e-36 157.1 124 63.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.1e-36 157.1 141 57.4
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.8e-36 156.4 140 59.3
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.8e-36 156.4 127 61.4
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.3e-36 156.0 123 61.0
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 4.0e-36 155.2 123 61.0
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 4.0e-36 155.2 123 61.0
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.0e-35 152.9 145 53.8
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.0e-35 152.9 127 60.6
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.0e-35 152.9 116 63.8
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.6e-35 152.5 123 59.3
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.4e-35 152.1 121 62.0
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 4.4e-35 151.8 130 58.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 5.8e-35 151.4 123 62.6
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 5.8e-35 151.4 106 67.9
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 7.6e-35 151.0 104 69.2
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 9.9e-35 150.6 122 61.5
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 9.9e-35 150.6 120 60.8
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 9.9e-35 150.6 127 58.3
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-34 150.2 115 63.5
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.3e-34 150.2 127 63.0
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.2e-34 149.4 96 71.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.9e-34 149.1 115 63.5
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 3.7e-34 148.7 93 76.3
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.9e-34 148.3 97 74.2
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.9e-34 148.3 106 66.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.1e-33 147.1 107 63.6
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.1e-33 147.1 119 58.0
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.4e-33 146.7 120 60.0
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.4e-33 146.7 118 65.3
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.9e-33 146.4 134 56.0
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.9e-33 146.4 120 58.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.4e-33 146.0 84 79.8
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 3.2e-33 145.6 84 76.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 3.2e-33 145.6 97 71.1
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 7.1e-33 144.4 84 76.2
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 7.1e-33 144.4 145 51.0
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 7.1e-33 144.4 105 68.6
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 9.2e-33 144.1 144 52.1
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 9.2e-33 144.1 144 52.1
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 9.2e-33 144.1 86 75.6
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.2e-32 143.7 106 66.0
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.6e-32 143.3 104 70.2
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.6e-32 143.3 145 55.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.1e-32 142.9 96 70.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.7e-32 142.5 123 58.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 3.5e-32 142.1 106 64.2
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 4.6e-32 141.7 111 61.3
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 6.0e-32 141.4 124 56.5
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.3e-31 140.2 108 62.0
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.3e-31 140.2 86 74.4
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.7e-31 139.8 96 68.8
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 2.3e-31 139.4 79 78.5
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 3.3e-30 135.6 111 60.4
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 4.3e-30 135.2 84 75.0
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 7.3e-30 134.4 127 56.7
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 9.6e-30 134.0 98 66.3
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 9.6e-30 134.0 119 58.0
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 2.8e-29 132.5 83 71.1
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.1e-28 130.6 99 63.6
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.4e-28 130.2 78 75.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.4e-28 129.4 84 70.2
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 6.8e-28 127.9 84 70.2
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 8.9e-28 127.5 81 70.4
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.2e-27 127.1 84 71.4
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.0e-27 126.3 99 62.6
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 3.8e-26 122.1 78 67.9
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 6.4e-26 121.3 115 56.5
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.4e-26 120.9 84 70.2
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 8.4e-26 120.9 84 70.2
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.4e-25 120.2 96 59.4
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 2.4e-25 119.4 81 64.2
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 3.2e-25 119.0 81 64.2
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 4.2e-25 118.6 96 58.3
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 9.3e-25 117.5 96 58.3
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 6.0e-24 114.8 78 64.1
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.0e-23 114.0 90 65.6
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.0e-23 114.0 83 67.5
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 8.7e-23 110.9 61 80.3
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 8.7e-23 110.9 81 63.0
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.9e-22 109.8 61 80.3
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.9e-22 109.8 77 68.8
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.1e-21 106.3 61 78.7
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 1.4e-20 103.6 76 64.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.2e-19 100.5 77 59.7
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.4e-19 99.0 61 73.8
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 4.4e-19 98.6 85 56.5
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.4e-17 93.6 135 42.2
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 2.4e-17 92.8 54 74.1
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.7e-15 86.7 144 36.8
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 8.7e-15 84.3 109 40.4
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 6.2e-13 78.2 45 71.1
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 3.1e-12 75.9 39 82.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 5.3e-12 75.1 65 53.8
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.0e-11 73.2 40 75.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.3e-10 70.5 38 78.9
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.2e-10 69.7 38 76.3
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 2.2e-10 69.7 71 52.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.9e-10 69.3 37 75.7
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 3.8e-10 68.9 45 66.7
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 6.4e-10 68.2 53 58.5
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 3.2e-09 65.9 58 56.9
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.2e-09 65.9 58 56.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.3e-07 59.7 38 60.5
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 3.3e-06 55.8 39 64.1


User provided reference genes

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