Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 4.1e-117 424.9 235 100.0
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.8e-51 206.8 194 68.6
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 7.7e-47 191.4 188 61.7
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 2.2e-41 173.3 183 56.8
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.2e-39 167.5 193 55.4
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.3e-38 164.1 196 58.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 5.0e-38 162.2 202 58.9
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 5.0e-38 162.2 99 86.9
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 8.5e-38 161.4 148 65.5
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.9e-37 160.2 195 54.4
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.9e-37 160.2 195 54.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 8.0e-36 154.8 134 63.4
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.3e-35 153.3 96 82.3
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.0e-35 152.9 191 56.0
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.0e-35 152.5 177 54.8
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 5.2e-35 152.1 195 55.9
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 8.8e-35 151.4 189 52.9
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 8.8e-35 151.4 100 80.0
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.5e-34 150.6 187 50.8
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.0e-34 150.2 148 64.2
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.4e-34 149.4 96 82.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 4.4e-34 149.1 172 52.9
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 7.5e-34 148.3 131 67.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.8e-34 147.9 122 65.6
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.3e-33 147.5 175 51.4
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.3e-33 147.5 186 50.0
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.7e-33 147.1 132 63.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.7e-33 147.1 96 81.2
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.2e-33 146.7 128 63.3
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.2e-33 146.7 195 54.4
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.1e-32 144.4 189 50.3
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.1e-32 144.4 94 81.9
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.1e-32 144.4 191 53.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.1e-32 144.4 152 55.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.4e-32 144.1 94 81.9
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.4e-32 144.1 189 50.3
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.4e-32 144.1 181 55.2
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.4e-32 144.1 124 67.7
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.4e-32 144.1 128 68.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.8e-32 143.7 92 82.6
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.4e-32 142.1 99 76.8
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 5.4e-32 142.1 99 75.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 7.0e-32 141.7 102 72.5
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 9.1e-32 141.4 128 60.9
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.1e-32 141.4 128 60.9
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.1e-32 141.4 172 54.1
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 9.1e-32 141.4 172 54.1
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 9.1e-32 141.4 127 63.8
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.6e-31 140.6 98 74.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.6e-31 140.6 121 64.5
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.7e-31 139.8 99 73.7
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.7e-31 139.8 124 60.5
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 3.5e-31 139.4 91 80.2
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 3.5e-31 139.4 91 80.2
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 3.5e-31 139.4 99 75.8
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 3.5e-31 139.4 93 77.4
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 4.5e-31 139.0 95 71.6
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 4.5e-31 139.0 95 72.6
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 4.5e-31 139.0 95 71.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 4.5e-31 139.0 124 60.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.5e-31 139.0 125 66.4
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 4.5e-31 139.0 99 73.7
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 5.9e-31 138.7 95 71.6
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 5.9e-31 138.7 95 71.6
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 7.7e-31 138.3 94 73.4
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.0e-30 137.9 95 71.6
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.0e-30 137.9 95 71.6
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.3e-30 137.5 166 51.2
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.7e-30 137.1 95 71.6
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 2.2e-30 136.7 92 73.9
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 2.2e-30 136.7 92 73.9
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 2.2e-30 136.7 92 73.9
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.2e-30 136.7 166 50.6
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.9e-30 136.3 93 73.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.9e-30 136.3 145 56.6
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 5.0e-30 135.6 95 70.5
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 6.5e-30 135.2 93 72.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.5e-30 135.2 98 74.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 6.5e-30 135.2 92 77.2
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.5e-30 135.2 99 70.7
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 8.5e-30 134.8 192 51.0
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 8.5e-30 134.8 94 73.4
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.1e-29 134.4 157 52.9
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.5e-29 134.0 97 72.2
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-29 134.0 130 59.2
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.9e-29 133.7 95 71.6
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 3.2e-29 132.9 95 73.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 4.2e-29 132.5 192 47.9
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 4.2e-29 132.5 98 73.5
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 5.5e-29 132.1 95 72.6
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 5.5e-29 132.1 106 70.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 7.2e-29 131.7 127 61.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.5e-29 131.3 117 67.5
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 9.5e-29 131.3 81 85.2
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 2.1e-28 130.2 121 61.2
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 3.6e-28 129.4 87 72.4
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 6.1e-28 128.6 188 45.2
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.0e-27 127.9 99 65.7
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.8e-27 127.1 92 69.6
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.0e-27 125.9 90 75.6
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 4.0e-27 125.9 92 68.5
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.2e-27 125.6 90 76.7
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 6.8e-27 125.2 92 70.7
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 5.7e-26 122.1 191 49.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 9.8e-26 121.3 189 40.2
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 3.1e-24 116.3 77 76.6
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.0e-22 111.3 73 78.1
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.3e-22 110.9 72 80.6
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.7e-22 110.5 96 60.4
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.5e-21 107.5 86 62.8
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 2.5e-21 106.7 78 66.7
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.8e-19 100.5 78 62.8
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.2e-18 97.8 99 54.5
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.5e-18 95.1 103 50.5
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 9.8e-18 94.7 102 51.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.7e-17 94.0 86 57.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.2e-17 93.6 71 74.6
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 3.9e-14 82.8 85 44.7
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.5e-13 78.2 63 71.4
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 2.1e-12 77.0 95 48.4
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 4.7e-12 75.9 57 63.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 3.1e-11 73.2 147 39.5
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 5.2e-11 72.4 57 70.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 5.2e-11 72.4 160 39.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 2.9e-09 66.6 41 82.9
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 3.7e-09 66.2 119 38.7
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 7.0e-08 62.0 39 82.1
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 7.8e-07 58.5 79 45.6
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 8.6e-06 55.1 136 39.7


User provided reference genes

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