Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 3.1e-276 954.5 481 100.0
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.5e-235 817.8 480 82.5
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 3.1e-228 795.0 485 79.0
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 1.3e-221 773.1 481 77.5
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.5e-219 766.1 483 78.3
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 3.8e-218 761.5 484 75.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.6e-216 755.0 486 75.5
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 3.9e-215 751.5 482 75.3
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.7e-215 750.7 484 76.0
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.1e-214 750.0 490 75.9
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.5e-214 749.6 479 75.6
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 7.4e-214 747.3 479 75.4
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.7e-213 746.1 486 75.7
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.7e-213 746.1 426 81.9
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.7e-213 746.1 484 76.0
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.7e-213 746.1 462 79.7
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.6e-211 739.6 484 74.8
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 2.6e-211 738.8 484 74.6
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 2.6e-211 738.8 483 73.9
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 7.7e-211 737.3 487 76.6
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 7.7e-211 737.3 484 74.8
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.3e-210 736.5 446 77.6
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.3e-210 736.5 490 74.5
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 3.8e-210 734.9 486 74.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 8.5e-210 733.8 448 77.0
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.1e-209 733.4 437 80.3
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.5e-209 733.0 482 73.7
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.9e-209 732.6 433 79.9
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 9.4e-209 730.3 451 77.2
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.0e-207 726.9 483 74.5
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.4e-207 726.5 483 73.1
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.4e-207 726.5 439 78.1
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.0e-207 725.3 483 73.1
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 4.0e-207 724.9 431 79.4
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 5.2e-207 724.5 445 77.1
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 5.2e-207 724.5 490 73.5
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 6.7e-207 724.2 445 77.1
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 8.8e-207 723.8 482 72.4
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.5e-206 723.0 451 75.2
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.5e-206 723.0 491 73.3
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.6e-206 722.2 446 78.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.6e-206 722.2 425 80.2
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 5.7e-206 721.1 451 74.9
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.3e-205 719.9 446 77.4
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 4.8e-205 718.0 431 79.4
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 6.3e-205 717.6 484 71.9
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 8.3e-205 717.2 484 71.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.4e-204 716.5 425 79.8
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.4e-204 715.7 426 79.3
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 7.0e-204 714.1 425 79.1
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 9.1e-204 713.8 483 72.0
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.0e-203 712.6 434 77.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.9e-203 711.1 425 78.1
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 5.9e-203 711.1 467 76.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 5.9e-203 711.1 425 78.1
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.0e-202 710.3 425 79.8
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.7e-202 709.5 424 78.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.9e-202 708.8 490 70.0
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 2.9e-202 708.8 489 71.8
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.5e-201 706.4 482 71.0
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.9e-201 706.1 489 70.8
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 3.2e-201 705.3 424 77.6
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 5.5e-201 704.5 490 70.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 5.5e-201 704.5 423 79.0
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 5.5e-201 704.5 497 71.4
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.2e-200 703.4 517 66.9
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.6e-200 703.0 489 70.1
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 4.7e-200 701.4 490 70.4
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 4.7e-200 701.4 488 70.1
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 4.7e-200 701.4 488 70.1
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 8.0e-200 700.7 439 77.7
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 8.0e-200 700.7 425 77.6
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.0e-199 698.7 432 77.5
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 5.2e-199 698.0 433 76.9
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.6e-198 695.7 447 75.6
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.3e-197 693.3 446 73.1
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.7e-197 693.0 489 69.7
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.7e-197 693.0 489 69.7
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 8.3e-197 690.6 491 70.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.4e-196 689.9 424 75.2
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 4.1e-196 688.3 445 75.3
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.4e-196 688.0 461 70.9
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 9.1e-196 687.2 498 69.5
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.2e-195 686.8 419 78.3
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 4.5e-195 684.9 433 76.0
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.8e-192 675.6 403 77.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 7.5e-190 667.5 425 74.8
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.4e-188 663.3 401 76.8
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.5e-187 658.7 405 77.0
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 4.5e-187 658.3 378 83.3
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.0e-186 657.1 484 66.5
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-186 656.4 435 71.0
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.8e-183 646.4 474 69.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.2e-182 643.7 424 72.9
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 9.2e-180 634.0 493 65.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.0e-179 632.9 411 73.5
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 6.0e-179 631.3 378 79.6
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 5.6e-177 624.8 482 68.7
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.2e-174 617.1 484 66.1
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.1e-171 606.3 439 66.5
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 5.1e-170 601.7 441 66.0
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.2e-168 597.0 470 63.8
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 6.2e-168 594.7 390 72.8
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 5.8e-166 588.2 394 71.6
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 5.8e-166 588.2 341 82.4
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.3e-165 587.0 378 75.9
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.7e-165 586.6 445 62.7
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.1e-155 553.1 403 67.2
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.4e-151 540.4 445 60.7
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 1.2e-150 537.3 380 68.9
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 8.7e-146 521.2 454 57.3
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.1e-145 520.8 326 78.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.8e-126 455.3 256 83.2
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 9.0e-119 431.4 297 69.7
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 9.0e-119 431.4 297 69.7
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.2e-115 421.0 391 54.5
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 4.1e-111 406.0 348 60.3
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-107 394.4 295 65.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 2.4e-103 380.2 285 64.9
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 3.1e-103 379.8 270 69.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.2e-102 377.9 264 69.7
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.9e-101 373.2 294 64.3
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.8e-96 356.7 231 77.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.0e-90 336.7 387 46.5
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.5e-86 322.8 208 73.6
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 8.8e-82 308.5 331 47.7
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 4.1e-71 273.1 580 32.4
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.9e-68 264.2 250 54.4
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.7e-48 196.8 458 31.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 2.4e-47 194.1 110 83.6
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 7.6e-41 172.6 113 75.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.6e-38 164.9 112 70.5
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.4e-31 141.0 82 70.7
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.3e-29 134.4 90 75.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 7.9e-22 109.4 60 76.7
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 5.1e-21 106.7 71 71.8
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.9e-20 104.8 89 59.6
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 3.3e-20 104.0 69 72.5
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 4.3e-20 103.6 69 72.5
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 7.4e-20 102.8 68 73.5
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 7.4e-20 102.8 69 72.5
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 9.6e-20 102.4 92 57.6
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.1e-19 101.3 70 70.0
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 2.8e-19 100.9 69 72.5
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.7e-19 100.5 69 69.6
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 6.2e-19 99.8 68 70.6
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 6.2e-19 99.8 69 69.6
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.0e-17 94.7 53 73.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.6e-14 85.1 69 65.2
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 9.6e-12 75.9 85 51.8
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 9.0e-10 69.3 56 60.7
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.5e-09 68.6 58 58.6
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.3e-08 65.5 45 68.9
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 2.5e-07 61.2 51 56.9


User provided reference genes

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